Bacterioplanoides sp. SCSIO 12839: KFF03_12940
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Entry
KFF03_12940 CDS
T08310
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
bacz
Bacterioplanoides sp. SCSIO 12839
Pathway
bacz03030
DNA replication
bacz03430
Mismatch repair
bacz03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bacz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KFF03_12940 (dnaE)
03430 Mismatch repair
KFF03_12940 (dnaE)
03440 Homologous recombination
KFF03_12940 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bacz03032
]
KFF03_12940 (dnaE)
03400 DNA repair and recombination proteins [BR:
bacz03400
]
KFF03_12940 (dnaE)
Enzymes [BR:
bacz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
KFF03_12940 (dnaE)
DNA replication proteins [BR:
bacz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
KFF03_12940 (dnaE)
DNA repair and recombination proteins [BR:
bacz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
KFF03_12940 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
HROB
tRNA_anti_2
RE_XamI
Motif
Other DBs
NCBI-ProteinID:
UTW47474
UniProt:
A0A9J7AF25
LinkDB
All DBs
Position
complement(2833514..2837008)
Genome browser
AA seq
1164 aa
AA seq
DB search
MSASGFVHLRVHSEFSLYDSTVRVKKLLATAESMGMPAVALTDQANMYALVKFYKGALGS
GIKPILGADLWLENEEDIHAPFRITALCQTPDGYLGLRELISRGFMDNQHFDKAIIKKEW
LFEQNNGLIVLAGARDGDIGQRILKGDLEGAEALAADYQQVFGDRFYYEVQRTGRQGDES
VVKAGMMLGGKLGMPLVATNDVRFLAADDFEAHETRVSIGQGYALEDKRRPREYSNQQYF
RSAEEMAELFADIPSAIENTVEIARRCSVEVLLGKYFLPDYPIPEGMDEDDFFRKISEVG
LQERLEFIFSDLDPNSPEFAEKRKPYDERLKFELDIIIQMGFPGYFLIVMDFIQWAKDHN
IPVGPGRGSGAGSLVAYAQKITDLDPLEYDLLFERFLNPERVSMPDFDIDFCMEDREKVI
SYVADNYGREAVSQIVTFGTMAAKAVVRDVARAQGKSFGLADKLSKLIPGDPGMTLEKAL
KVEPALGEFLNDDDEAQEIWEMALKLEGIARQTGKHAGGVVIAPTKLTDFSATACEPGGA
GLVTQFDKNDVEEAGLVKFDFLGLRTLTIIDWALKTINRIRAKDNLEPIRVEEIPLDDKP
SIEYLKTAQTTAVFQLESRGMKDLVRRLQPDNLEDMIALVALFRPGPLESGMVDDFINRK
HGRAEVAYPHPDFQHESLKPILEPTYGVIVYQEQVMQIAQTLAGYTLGGADMLRRAMGKK
KPEEMAKQRETFREGAISVGVDPDLAMKIFDLVEKFAGYGFNKSHSAAYAVVSYHTLWLK
KHYPAPFMAAVMTSDMQNTDKVVGFIEECREMELELVLPNVNQSEFGFTVNDAGAIVYGL
GAVKGAGEGPVEAITEARAEGGEFKDLFDFCERCDSKRINKRVLEALVRCGAFDCFGEDR
SILMASIEDAVKAAGQSAANEAAGMMDLFGEVEAEVADEADPYERHRQLRKWTLKERLQG
EKDTLGLYVTGHPFDEYEKEVRQLVPTKLSHLQEGKGSQKLTGLVVDMRVMKNKRGDNMC
FVTLDDRSGRMEVALFADVYEEVREVVAKDKVLVVEAQVSHDDYSGGLKATGRSAMEISQ
ARLNFAKSLRIRVDNDKATDLLCKQLQQKLLPLENGCPVVLDFHNEVARCDIQLGDQWRI
NPTDDQLLQLKYEFGEDAVELLFN
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcttccggttttgttcatctgcgtgtccattctgaattctcgctgtacgacagt
acggtacgggtgaaaaagctgttggcgactgccgaaagcatggggatgcctgcggttgct
ttgacagatcaggccaatatgtatgcgctggtgaagttctacaaaggagcactgggcagt
ggtattaaaccgattcttggtgctgatctgtggcttgagaatgaagaagatattcatgca
ccgtttcggataacggctttgtgccagacaccagatggctaccttgggctgcgtgagctg
atttcccgtggctttatggacaaccagcactttgataaagccatcatcaaaaaagagtgg
ctgtttgagcagaataacggcctgattgtgttagccggcgcccgtgatggtgatattggc
cagcgtattctgaaaggtgatttagagggggcagaagccttagcggcagattatcaacaa
gtgtttggtgatcgtttttattacgaggtacaacgtaccggacgccagggtgatgaatcg
gttgtgaaagcgggaatgatgctgggcggcaagttgggcatgccgctggtggcgactaat
gatgtacgtttcttagccgccgatgattttgaagcccacgaaacccgggtttccattggc
caggggtatgcgctggaggataaacgccgcccgcgtgagtacagtaatcagcaatacttc
cgcagcgctgaggaaatggctgagttatttgccgatattccttctgctattgaaaacacc
gttgaaattgcccgccgttgttcggttgaggttctgttaggcaaatatttcttgccggat
tacccgattccggaaggcatggatgaagatgactttttccgcaaaatctccgaagtgggt
ttgcaggaacgactggaatttattttctccgatcttgacccgaattccccggaatttgct
gaaaaacgaaaaccctacgatgagcgtttaaagttcgagctggatattattatccagatg
ggattccccggttatttcctgatcgtaatggactttattcaatgggccaaagatcacaat
attccggttggcccggggcggggttccggcgcaggctcactggttgcttatgcgcaaaaa
attaccgacctggatccgctggaatacgacttactgttcgaacgatttctgaacccggaa
cgggtttccatgcccgactttgatatcgacttctgtatggaagatcgtgaaaaagtgatc
tcctacgtggccgataactacggtcgtgaagcggtatcgcagattgtgacgtttggcacc
atggcggccaaagcggtggtacgtgacgtagcccgtgcgcaaggtaagtcgttcggttta
gccgataaattatccaaattaattcccggcgacccaggtatgacgctggaaaaagcgtta
aaagtggagcccgcgcttggcgagtttttaaacgacgatgatgaagcccaggaaatctgg
gaaatggcgttaaaactcgaaggtattgcccgacaaaccggtaaacacgccggtggtgtg
gtgattgcgccaaccaaattaaccgatttctcagccaccgcctgtgaaccgggtggcgcc
ggtctggtgactcaatttgataaaaatgacgttgaagaagcaggcttagttaagttcgac
tttttgggcttgcggacgttaactattatcgattgggcgttaaaaaccattaatcgtatt
cgtgctaaagacaatcttgagccgatccgggtagaagaaattccactggatgataaaccc
tcgattgagtatctgaaaaccgcacaaaccaccgcggtgtttcagctggaatcccgcggg
atgaaagatctggtacgccgcctacagccggataatctggaagacatgattgcactggtg
gcgctgttccgtccggggccattggaatctggcatggtggatgactttattaaccggaag
catggccgtgccgaagtggcttacccgcatccggacttccaacacgaaagtttaaaacca
attctggaaccgacctacggcgtcattgtttatcaagaacaggttatgcagatcgcccag
acattggctggctacacgctgggcggcgcggatatgttgcgtcgggcgatgggtaagaaa
aagccggaagaaatggccaaacaacgggaaaccttccgcgaaggggcgatttcggttggg
gttgatccagacctggcgatgaagatttttgacctggtggaaaagtttgccggctacggt
tttaacaaatctcactcggcggcttatgcggttgtttcttatcatacgctgtggctgaaa
aaacattaccctgcgccgtttatggcggcggtaatgacctccgatatgcaaaacaccgat
aaagtagtgggctttattgaagaatgtcgtgagatggaattagagctggtattgcccaat
gtgaaccagtcggaatttggttttaccgtgaatgatgccggtgccattgtgtatggttta
ggcgcggtaaaaggtgccggtgaaggccctgtagaagctattactgaggcacgtgctgaa
ggtggtgaatttaaggatttgttcgatttttgtgagcgttgtgattccaaacgcattaat
aaacgtgtgttagaagccttggtacgttgtggtgcgtttgattgttttggtgaagatcgt
tctattttaatggccagcattgaagatgcggttaaagcggcggggcaaagcgcggctaat
gaagcggcgggcatgatggatttatttggtgaagtggaagccgaagtggcggatgaagcg
gacccgtatgaacgtcatcgtcagttgcgtaagtggaccttaaaagagcgcttacagggc
gaaaaagacacgctgggtttatacgttactggccacccgtttgatgagtatgaaaaagaa
gttcgccagttagtccccaccaaactgtcccaccttcaggaaggcaaaggctcacaaaaa
ctcactggcttagtggtggatatgcgggtgatgaaaaacaaacgtggtgacaatatgtgt
tttgttaccctggatgatcgctcaggcaggatggaagttgccttgtttgctgacgtatat
gaagaagtgcgtgaggtggttgccaaagataaagtgctggtggtggaagcccaggttagc
catgacgattattctggcgggttaaaagccactggccgcagcgcaatggaaatcagtcag
gcacggctcaactttgctaaatcgttgcgtattcgtgtggataacgacaaagccacagat
ttattgtgcaaacaattgcagcaaaaattattaccattggaaaacggttgccctgtggtg
ctggatttccacaacgaagtcgctcgttgcgatattcagttaggcgaccaatggcggatt
aatccaacggatgatcaactgttgcagctgaaatatgagtttggtgaagatgctgtcgag
ttgttgtttaactga
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