Bacterioplanoides sp. SCSIO 12839: KFF03_15320
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Entry
KFF03_15320 CDS
T08310
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
bacz
Bacterioplanoides sp. SCSIO 12839
Pathway
bacz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bacz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KFF03_15320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bacz03019
]
KFF03_15320
03400 DNA repair and recombination proteins [BR:
bacz03400
]
KFF03_15320
Enzymes [BR:
bacz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KFF03_15320
Messenger RNA biogenesis [BR:
bacz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KFF03_15320
DNA repair and recombination proteins [BR:
bacz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
KFF03_15320
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
Thioredoxin_8
AAA_22
SNF2-rel_dom
Pex14_N
Motif
Other DBs
NCBI-ProteinID:
UTW47909
UniProt:
A0A9J7AHB9
LinkDB
All DBs
Position
complement(3388971..3390974)
Genome browser
AA seq
667 aa
AA seq
DB search
MPDSDSFLPQWQRVLQQTFGFNHLRPGQQPVVEALLAGRSAAAIFPTGSGKSLCYQLPAL
MLPHLTLVVSPLLALMQDQVAFLQSKGIAAASIDSSQSREQVQQIQADVRSGKIKILMVS
VERLKNERFRQFIEQIPISLLVVDEAHCISEWGHNFRPDYLKLPDYCADFKIPQVLLLTA
TATKAVIDDMCGRFQIQPQDVVTTGFYRPNLRLLVQPTAETERRQKCLQWLQHLNKKQSE
KGENFGAIIYVTLQQTAHEVADYLAPHLPFPVKAYHAGLSSDERDQIQQEFMVGTTPCIV
ATIAFGMGVDKSNIRQVMHYDLPKSIENYSQEIGRAGRDGLPSDCVMLADSSGFQVLENF
VYGDTPELSGIHIVLDQIRNNLATHFNDQRWEVLMTPLSALSNIRLLPLKTLLVNLEMRG
ILTAQFSYFAEYKYKLTMSESELLANFDEARQQFLQQVFNTSQKARSWITLDTEALIKHT
GDSESRRRAIVALEYCQEKGWLELQSKQMTDVYRVDVDKLNQPDLAQQLASHFAEKERSE
IQRIQAMLQLLQQPTCLSRSLAHYFNDFNMTQDCGHCSVCIGKHQAWPQPESLPVLQSEQ
LQDLSVPLQQAIQQQFNQAASVDLLTRYLAGITAPWLTKVKARQLGAMGVLEHYPYAQIK
NALTKNQ
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atgcctgattctgattcctttctgcctcaatggcagcgcgtactgcaacaaacctttggt
tttaatcatcttcgtcccgggcagcagccggtggttgaggctctattggccggtcgcagt
gctgcggctatctttccgaccggctctggcaagtcgttgtgttatcaattacctgcctta
atgctgccgcatctcaccttagtcgtgtcaccgttattggcgttaatgcaggatcaggta
gcatttttacagagtaaaggtatcgctgccgccagtattgattccagtcagagccgggaa
caagtgcaacaaattcaggccgatgtgcgcagtggcaaaatcaaaattcttatggtgtca
gttgagcgtttaaaaaacgaacgctttcggcagtttattgaacaaattccgatttcgtta
ttggtggtcgacgaagcgcactgtatttcagaatggggccataattttcgcccggattat
ttaaaactgccggattattgcgctgatttcaaaattcctcaggtactgctgttgaccgcg
acggccactaaagcggtgattgacgatatgtgtggtcgttttcagattcagccgcaggat
gttgtcactacgggcttttatcgtccgaatttacgtttattagtacagcctacggctgaa
accgagcgacgacaaaaatgcttacaatggttgcagcacctgaataaaaagcagtctgaa
aaaggtgaaaactttggtgcaattatttatgtcacgttgcaacaaacggcgcatgaggtg
gctgattatttagcccctcatttgccctttcctgtgaaggcgtatcatgctgggttaagc
agtgatgagcgtgatcaaatccagcaggaatttatggtgggtacaacgccttgtattgtt
gccaccattgcatttggcatgggcgtggataaaagtaatattcgccaggtgatgcattat
gatctgcccaagtcgattgaaaattacagccaggaaatcggccgtgccgggcgagacggt
ttgccttctgattgtgtaatgctggcagatagctctggctttcaggtgctggaaaatttt
gtttatggtgataccccggagttatccggtattcatattgtgctggatcagattcgtaat
aatctggcgacacattttaatgatcagcgatgggaagtattaatgacgccattatcggcg
ttgagcaatattcgcttgttacccttaaaaactctgttggtgaatttagaaatgcgcggc
attttaaccgcgcaattcagttattttgccgaatataaatacaagctgacgatgagtgaa
agtgaattgttggccaattttgatgaggcgcgtcagcagtttctgcagcaggtatttaat
accagtcaaaaagcccgcagctggattacgctggataccgaagcgctgataaaacacacg
ggtgatagcgaatcccgccgtcgcgcaattgtggcgctggaatattgccaggaaaaaggc
tggctggagctacaaagcaaacaaatgaccgatgtatatcgggtggatgtggataagctg
aatcagcctgatctggcacagcagttggccagccattttgccgaaaaagagcgcagtgaa
attcagcgtattcaagccatgctgcagcttctgcaacaaccaacgtgtttaagccgctca
ctggcgcattactttaacgacttcaatatgacgcaggattgtggtcattgttcggtgtgt
attggtaaacaccaagcctggccgcagccggaatcgctgcctgtgctgcaatccgaacag
ctgcaagatttatctgtgccgttgcaacaggctattcagcagcaatttaaccaggcagct
tctgtcgatctgttaacccgctacctggccggaattaccgctccatggctaacgaaagta
aaagccaggcagttaggagcaatgggggtcttggagcactatccctatgctcagatcaag
aacgcgttaactaaaaaccagtaa
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