Bacterioplanoides sp. SCSIO 12839: KFF03_16715
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Entry
KFF03_16715 CDS
T08310
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
bacz
Bacterioplanoides sp. SCSIO 12839
Pathway
bacz03420
Nucleotide excision repair
bacz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bacz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KFF03_16715 (uvrD)
03430 Mismatch repair
KFF03_16715 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bacz03400
]
KFF03_16715 (uvrD)
Enzymes [BR:
bacz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KFF03_16715 (uvrD)
DNA repair and recombination proteins [BR:
bacz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KFF03_16715 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
KFF03_16715 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
AAA_22
AAA_11
Cas_Cas2CT1978
Motif
Other DBs
NCBI-ProteinID:
UTW48172
UniProt:
A0A9J7ADZ3
LinkDB
All DBs
Position
complement(3715240..3717471)
Genome browser
AA seq
743 aa
AA seq
DB search
MDISLLLDNLNDGQRNAVAASSKHQLVLAGAGSGKTRVLVQRIAWLLNVENVSPFAVMAV
TFTNKAAKEMRGRLEELLNVPSNGLWVGTFHGLAHRLLKQHWREAKLPQHFQILDSDDQL
RLIKRLMKAHNIDDSRYPPKQIQWFINGQKDEGRRAAHVIPSADPFQETLRTVYSIYEEN
CQQNGLVDFGEILLRAHELWLHNPELLEHYQQRFRNILVDEFQDTNNIQYAWIRLLAGDR
VSVMAVGDDDQSIYGWRGANIDNIRNFQQDFPGAELIKLEQNYRSTANILAAANAVITNN
QGRLGKNLMTEGAEGEPIRLYSAFNEQDEARYIADLVDEWSRDGRQRTEMAVLYRSNAQS
RTLEEAFLRSGIPYRIYGGQRFYERLEIKNALSYLRLLLNRQDDAAMERVINVPARAIGE
KTVEILRSHARDQGCSLWQAANEAVSLGLLPKRAGTAVQNFVDLLDEMSVGIEELKLHEI
VDQVITQSGLIEHHKKEKGEKGQARLDNLEELINAARQFETGDYLPSDETDADGEEPTSQ
LDLAVFLDNAALDAGEGQADEYEDAVQLMTLHSAKGLEFPQVVLAGMEEGLFPHKMSMDE
AEGLEEERRLAYVGITRAMEQLILTHAESRRLHGQENFSTPSRFIREIPQELIQEVRLKN
SVSRPLTAKRQGGFNTPAQPDFIKQEQSASVPYDLGNRVYHEMFGEGTVLQFEGQGPGLR
VQVFFDDAGQKWLVANFAKLEKV
NT seq
2232 nt
NT seq
+upstream
nt +downstream
nt
atggatatttcacttttgctcgataacttaaacgatggtcagcgcaatgcggtggctgcc
tcttccaaacatcagctggtattggccggcgcgggttcggggaaaacccgggtgctggtg
cagcgtattgcctggctgttaaatgtggagaacgtatcgccgtttgcggtgatggcggtg
acatttaccaacaaggcggcgaaagaaatgcgcggccgtctggaagagctgttaaatgtg
ccttccaatggtttatgggtgggtactttccacggcctggcacatcgcttgttgaagcaa
cactggcgtgaagccaaactgccgcaacattttcagattctcgacagtgacgatcagctg
cggttaatcaaacgcctgatgaaagcgcacaacatcgacgacagccgttatccgccaaaa
caaattcagtggtttattaacggccagaaagatgaaggccgtcgtgcggcgcatgtgatt
ccatcggctgatccgtttcaggaaaccttgcgcacggtgtattccatctacgaagaaaac
tgccagcaaaatggtctggtggattttggtgaaattctgctgcgtgctcatgaattatgg
ttgcacaacccggaactgctggaacattatcagcaacgcttccgcaacattttggtcgac
gaatttcaggacaccaacaatatccaatacgcttggattcggctgttagccggtgatcgg
gtttcggtgatggcggtaggtgatgacgatcagtctatttacggctggcgcggcgccaat
atcgataatatccgtaacttccagcaagacttcccgggcgctgagctgattaagctggag
cagaattatcgttctacggctaatatcctggccgccgccaacgccgtgattaccaataac
caggggcgtttaggtaaaaacctgatgacggaaggtgctgaaggcgaaccgattcgttta
tacagcgcctttaatgagcaggacgaagcccgttatattgccgatttggtggatgagtgg
tcacgtgatggccgccagcgtaccgagatggcggtgttgtatcgttccaatgctcagtcg
cgcaccctcgaagaagcgtttttgcgctcaggcattccttaccgcatttatggtggccag
cgtttttatgagcgcctggaaattaaaaatgccttgtcgtatttgcgcctgttattaaat
cgacaggacgatgcggcgatggagcgagtcattaatgttccggcgcgggcgattggcgaa
aaaaccgtggaaattttgcgcagccatgcccgagatcagggttgttcgttatggcaggcc
gctaatgaagcggtgtcgttaggtttattaccgaaacgtgccggaactgccgtgcagaac
tttgtcgatttactcgatgaaatgagtgttggcatcgaagaattaaaattacacgaaatt
gttgatcaggttattacccaaagcggtttgatcgaacaccataaaaaagagaaaggtgaa
aaaggtcaggcgcgcctcgataacctggaagagttaattaacgccgcgcgtcagtttgaa
accggcgattatctgccatccgatgaaacagatgctgatggtgaagaaccgaccagccag
ttagatctggcggtcttcctcgataacgctgcgttggatgcgggtgaaggtcaggcggat
gaatacgaagacgcggtgcaattaatgacgctgcactcggccaaaggtctggagttcccg
caagtagtattggcgggcatggaagaaggtttattcccgcataaaatgtcgatggatgaa
gcggaaggcctggaagaagagcgtcgtctggcttacgttggtatcacccgggcaatggag
cagttaattctgactcatgccgaaagccgtcgtttgcatggtcaggaaaatttcagtacg
ccgtcgcgttttattcgggaaattccgcaggaactgattcaggaagttcgtctgaaaaac
agtgtcagtcgaccgctgacggcaaaacgccaaggtgggtttaatacaccggcgcaacca
gattttattaaacaagagcagagtgcctcggtaccgtacgatctgggtaaccgtgtttac
catgagatgtttggtgaaggcacggtgctgcagtttgaaggtcagggcccgggactgcgg
gtgcaggtgttttttgatgacgccggtcagaagtggctagtggctaattttgccaagctt
gaaaaggtttga
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