Bifidobacterium adolescentis ATCC 15703: BAD_0644
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Entry
BAD_0644 CDS
T00437
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bad
Bifidobacterium adolescentis ATCC 15703
Pathway
bad03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bad00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BAD_0644 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bad03400
]
BAD_0644 (mfd)
Enzymes [BR:
bad01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BAD_0644 (mfd)
DNA repair and recombination proteins [BR:
bad03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BAD_0644 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
RecG_dom3_C
AAA_22
SpaA
AroM
Motif
Other DBs
NCBI-ProteinID:
BAF39425
UniProt:
A1A142
LinkDB
All DBs
Position
805499..809065
Genome browser
AA seq
1188 aa
AA seq
DB search
MAAEPTSPAQPPQLPTAGSLAGILDVLETDDDFRALIAGEIEEPESDIDPSITVGVPDGL
RPALAAGAAGKQPVVLVVASSREAEETVESIRSWYDGDPNDVAQLEAWETLPHERLSPRA
DTVASRMAVFRRLKHPEEGSTLFGPIRILVMPVRSLIQPVVAGLGDVEPLVFSQGEELLL
DEASRKLVENAYTRVDLVMDRGEFAVRGGIIDVFPPTLPHPVRIEFFGDEIDTIREFHAS
DQRTYGKDISTVWATPCRELQLTDQIRQRAKSLIGSIPNAEDMLGSIANAIPVEGMESLL
PALVDDMEPVQGMLPKHALVMLSDPEKLRRAADDLAKTANEFLAASWHVAASGHGAGAPI
TFDQANFYDFEETISALVFSKHDVWKLTSFGVDATREGHIQLDATKPGEYRGDENKAASG
IEGLLDAGYAVTITAAAQGTLTRLKRAINETGIANFDCVRSHAIDGFVDDAAKIALLTER
DLTGRTSAAGQAKTPKRRRKAIDLMELKTGDYVVHEQHGIGRFVEMRQRTIGKGENQTTR
EYLVIEYAPSKRGAPADKLFIPTDQLDQVSKYIGAETPKLNKLGGSDWAATKAKARKHVH
EIAEDLVKLYSARQRTKGYAFSKDTPWQKELEDAFPYQETADQLTTIDEVKSDMEKPIPM
DRLICGDVGFGKTEIAVRAAFKAVQDSKQVAVLVPTTLLVQQHFETFTERFEGFPVNVAA
MSRFQTAKEINETIKGLEDGSVDVVIGTHKLLNPKIKFKDLGLVIIDEEQRFGVEHKETL
KALRTNVDVLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLPVLTYVGAYEDAQVTAAI
RRELLRGGQVFYVHNRVQDISSVAAKIHELVPESHVGIAHGKMGEKQLDGVIRDFWHRDI
DVLVCTTIIETGLDISNANTLIVDHADRFGLSQLHQLRGRVGRGRERAYAYFLYDPTKPM
TQQSHDRLATIAQNTALGSGFDVAMKDLELRGTGNLLGDEQSGHIEGVGFDLYVRMVSEA
VEQYKEPERKESVAVTIDLPIEASIPVDYIDSDKLRLEAYQKLASARTEDDLDELRDELT
DRYGKPPVDFEALFDVARLRFKARKLGISEIIAQGRNVRVSKFEPRESVQMRMARIYKGI
QYRPLTKTYLVPAPFAGSLGSKPMSSDEVVGWTSQLLDDLDWKPTPRQ
NT seq
3567 nt
NT seq
+upstream
nt +downstream
nt
atggccgctgaaccgacgtctccggcgcaaccaccgcaactgccgaccgcaggctcgctt
gccggcatcctcgacgtgctggaaaccgatgacgatttccgcgcgctcatcgccggggaa
atcgaagaaccggaatcagacatcgaccccagcatcaccgtcggtgtgccggacggccta
cgcccggcgctcgcagccggcgctgcgggcaaacagccggtcgtgctcgtcgtcgcctcc
agccgcgaagctgaggaaaccgtggagtccatccgttcctggtatgacggagacccaaac
gatgtggcgcagcttgaagcatgggagacccttccccatgaacggctttcaccacgcgcg
gacactgtggcaagccgcatggcggtgttccgcaggctgaagcatcccgaagagggcagc
acgctgttcggccccatccgcattctggtcatgccggtgcgctccctcatccaaccggtg
gtcgcaggcttgggggacgtcgaaccactcgtgttctcccaaggcgaggaactgcttctt
gacgaagcatcccgcaaactggtggaaaacgcgtacacgcgcgtcgacttggtgatggac
cgtggcgaattcgccgtccgcggtggcatcatcgacgtttttccgcccactctgccgcat
ccggtgcgtatcgaattcttcggcgacgagatcgacaccatacgtgaattccacgcatcc
gaccagcgcacctacggtaaggatatttccaccgtatgggccacgccatgccgtgaactg
cagttgaccgaccagattcgccaacgtgcgaaatcgctgatcggctccattcccaacgcc
gaggacatgctcggatccatcgccaacgccatcccggtggaaggcatggaatcgctgctg
cccgcgctggtcgacgatatggaaccggtgcagggcatgctgcccaagcatgcgctggtc
atgctgtccgacccggaaaaacttcgtcgcgccgccgacgatctggcgaaaaccgccaac
gaattccttgccgcaagctggcacgtcgccgcatccggacatggcgccggagcgccgatc
accttcgaccaggcgaatttctacgatttcgaggaaaccatctccgcactcgtcttctcc
aaacatgacgtgtggaaactcaccagcttcggcgtcgacgccacccgggaaggccacatc
caacttgatgccaccaaacccggtgaataccgcggtgacgaaaacaaagcggcctccggc
atcgaaggactgctcgacgccggctatgcggtgacgatcacggccgcggcccaaggcaca
ctcacccgactgaagcgtgcgatcaacgaaaccggcatcgcgaatttcgattgcgtccga
tcgcacgccatcgacggtttcgtggacgacgccgcgaaaatcgccctgctcaccgaacgc
gacctgaccggccgcacatccgccgcaggacaggcgaaaacgccgaaacgccgacgcaag
gccatcgacctgatggaactcaaaacgggcgattacgtcgtgcacgaacagcatggcatc
ggccggttcgtcgagatgcgccaacgtaccatcggcaaaggcgagaaccagaccacccga
gaatacctggtcatcgaatacgctcccagcaaacgaggcgcgccggcggacaaactgttc
atccccaccgaccagctcgaccaggtcagcaaatacatcggcgccgaaacgccgaaactc
aacaagctgggcggttccgactgggccgccaccaaagccaaggcgcgcaagcatgtgcat
gagatcgccgaggatctggtcaagctctactcggcacgccagcgtacgaaaggctatgcc
ttcagcaaggacacgccgtggcagaaggagctggaggacgctttcccctatcaggagacg
gccgaccagctcaccaccatcgacgaggtcaagtcggatatggagaaacccattccgatg
gaccgtctgatctgcggcgatgtgggctttggcaaaaccgaaatcgcggtgcgcgccgcg
ttcaaggcggtgcaggattccaagcaggtggccgtgctcgtgccgaccacactgctcgtg
caacagcatttcgagactttcaccgaacgtttcgaaggcttccccgtgaacgtggctgcc
atgagccgattccagaccgccaaggagatcaacgagaccatcaaggggcttgaagacggt
tccgtggatgtggtcatcggcacgcacaagctgctcaatccgaagatcaagttcaaggat
ctgggactcgtcatcatcgacgaggaacagcgtttcggcgtcgagcacaaggagacgctc
aaggcgttgcgcaccaatgtggacgtgctgagcctgtcggcaacgcctatcccgcgcacg
ttggaaatggctgtcaccggtatccgcgaaatgtccacgctggccacgccgccggaggat
cgcctgccggtgctcacctacgtcggcgcttacgaggacgcgcaggtcaccgccgccatc
cggcgcgagctgttgcgtggtgggcaggtgttctacgtgcacaatcgtgtgcaggacatc
tcctccgtcgcggcgaaaatccacgagctcgtgcccgaatcgcatgtcggcatagcccac
ggcaagatgggggagaaacagcttgacggtgtgatccgcgacttctggcatcgcgacatc
gacgtgctggtatgcaccaccatcatcgaaaccggccttgatatctccaacgccaacacg
ctgatcgtcgaccatgccgaccgcttcggcttgagccaattgcatcagctgcgtggccgc
gtcggtcgtggacgtgagcgcgcgtatgcgtacttcctgtacgatccgaccaagccgatg
acccagcaatcgcatgacaggctcgccaccatcgcgcagaacaccgcgctcggctctggc
ttcgacgtagccatgaaggatctcgaattgcgcggcaccggcaatttgctgggcgatgag
cagagcggccatatcgaaggcgtcggcttcgacctgtacgtgcgtatggtgtccgaagcg
gtcgaacagtacaaggagccggaacgcaaggaatcggttgccgtcaccatcgacctgccg
atcgaggcgtccattcccgtcgactacatcgattcggacaaactgcgattggaagcgtac
cagaaactcgcctccgcacgcaccgaagacgatctcgacgagctgcgcgacgaactcacc
gaccgttacggcaagccgcccgtcgatttcgaggcgctgttcgacgtggcgcggttgcgg
ttcaaggctcgcaagctcggcatttccgagatcatcgcgcaaggacgcaacgtgcgcgtg
tcgaagttcgagccgcgtgaatccgtgcagatgcgcatggccagaatctacaaaggcatc
cagtaccggccgttgaccaagacgtatctggtaccggctccattcgcaggctcgcttggt
tccaagccgatgagctcggacgaagtggtcggatggaccagtcaattgcttgacgatttg
gactggaaaccgacaccgcgtcaatga
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