Bifidobacterium adolescentis ATCC 15703: BAD_1120
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Entry
BAD_1120 CDS
T00437
Symbol
hrpA
Name
(GenBank) ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
bad
Bifidobacterium adolescentis ATCC 15703
Brite
KEGG Orthology (KO) [BR:
bad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bad03019
]
BAD_1120 (hrpA)
Enzymes [BR:
bad01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
BAD_1120 (hrpA)
Messenger RNA biogenesis [BR:
bad03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
BAD_1120 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
DEAD
Helicase_C
AAA_19
AAA_22
SLFN-g3_helicase
HA2_C
T2SSE
nSTAND3
NACHT
AAA_11
AAA_30
ResIII
Zeta_toxin
Cas3-like_C_2
NNH7
SRP54
AAA_16
TsaE
AAA_23
ABC_tran
Motif
Other DBs
NCBI-ProteinID:
BAF39901
UniProt:
A1A2G8
LinkDB
All DBs
Position
1385854..1389963
Genome browser
AA seq
1369 aa
AA seq
DB search
MRFEYPSQLPVSTARDDIAEAVRASQVVIISGQTGSGKTTQLPKILLELGRGSHGRQIVH
TQPRRLAARTVAERIASEMGVKLGEEVGYQVRFTDESSPKTRLRVVTDGILLAQIQRDPK
LMQYDTIVIDEAHERSLNIDFLLGYLTALLPKRRDLKLVITSATIDSVKFQEHFEHALHT
KVPVIEVSGRTYPVQIVYEPLGTAPALMRSVPGFETGAMPGDADYESLSAAPDGRDGRDS
RDTNVDMPTAVARACAELVIHSSHDRGPRDILVFASGERDIHEFENALRRHYGPRAVDMR
RPDAIEIVPLFARLSSKEQHKVFEPHEHQRIVIATNVAETSLTVPGIRYVVDPGTARISR
YSKTAKVQRLPIEPISQASANQRSGRCGRIADGIAIRLYSREDFETRPEFTEPEILRTSL
GAVALHMLSVGVARTARDVTDFGFIDPPDMKAVSDGFNELTELKAIARKHGEVVLTHTGR
MLARIPIDVRLGRMIIEAAKSTTPNTLAAVLVVVAFLSLQDPRERPDENREEADRIHNRY
ADPTSDFLTALNLWDRVFQADGEPSNSALRRICKTEYLSWLRMRQWKDLVAQLREMCREF
KFKLGEPIPVSRPPLEIRQLPLNQQAAHSLCCSWDAQGIHTSMLSGLLSMMGMQIVREPK
ASDFAGLKGAARARAMKRAQKMAKNDYQGARGTHFALFPASAVAKSTPQWVMSTELVETS
RLWARYSAEIDPAWAEPLAGALTRTTYADPHWSGSRGSAVASAKVLLYGLPIVQDRTVQW
GRINPLEARDFLIRQGLVEGDIQQRFSYDDFVMRNRDILEDAADDASRTRQVAQTVGDED
LFDFYNAIIPNTVTSVADLAKWWKTRHDEQPDLLDFDPDKVERLADSDSVSLDDYPDHWH
TLGTDGSPIDLRLSYIYDPHDPNDGVTVHVPLKALSRLTPEQFTWNVPGLLDGLIVGMIK
SLPKTLRVQFVPAPDTARRIRAWIDERYPDLPGSGSQQKPNLAPENEDGVAAWPDLPHAF
TQAAISIVGAQIHPEVLTGELWNKLAPYLRMTFAVEQQLPPNRKNQHGRRHARGPVKTLG
TGKSLVDLQRKFAEQAKASARHMVEKQARNAGDQGKIVEKANLLNKAGATTEARATMLWQ
GALDTLRLPGERISSRWLGTEALMLASAPYKSTKELTEDLQLAAVKRLLPNVDQLPDDEA
LANAVLDVREVYEDTVYAVAHDVIAILKRYAEVDKAVSGKADLPLLSVLQSIREHIATLV
FPGFIGKTPPDALPSIERYLHADLLRLAKAKNDKNRDVRWAWEADEAKQLADNTMAKAQR
EPAGPRHETLMKQAETLRWMLEEFYVSLWAQELGTPKPISLQRIKKAIA
NT seq
4110 nt
NT seq
+upstream
nt +downstream
nt
atgagattcgaatatccctcccaactgccggtttccacggcgcgcgacgacatcgccgaa
gcggtcagagcaagccaggtggtgatcatttccggacagacgggttccggtaagaccacg
cagctaccgaagatcctgcttgagctgggccgcggctcgcatggcaggcagatcgtgcac
acgcagccgcgcaggctcgccgcacgtaccgtcgccgagcgaatcgccagcgaaatgggc
gtgaagctgggcgaggaagtcggctatcaggtgcggttcaccgacgaaagctcgccgaag
acacggctgcgcgtcgtgaccgacggtatcctgctggcgcagatccaacgcgatcccaag
ctcatgcagtacgacacgatcgtcatcgacgaggcgcatgagcgcagcctgaacatcgat
ttcctgctcggctatctgaccgcgttgctgccgaaacgacgcgatctgaagctcgtcatc
acgtccgccaccatcgattcggtgaagttccaggagcatttcgaacacgcgctgcatacg
aaagtgccggtgatcgaagtgtcgggacgcacctaccccgtgcagatcgtgtacgagccg
ttgggtaccgcgccggcgctgatgcgctccgtgccgggcttcgaaaccggcgcgatgccg
ggagacgctgactacgagagcctgtccgcagcgccggatggtagggatggccgcgattca
cgcgatacgaacgtggacatgcccaccgccgtggcacgcgcctgcgccgaactggtcatc
cattcaagccacgaccgcgggccacgcgacatcctcgtgttcgcctccggcgagcgcgac
atccacgaattcgaaaacgcgctgcgccgccattacggaccgcgcgcggtggacatgcgc
cgccccgacgcgatcgagatcgtgcccctgttcgccaggctctcctcgaaggagcagcat
aaggtgttcgagccgcacgagcatcagcgcatcgtgatcgccacgaacgtggccgaaacg
tcgttgacggtgccgggcatccgctatgtggtcgatccgggcacggcgcgcatctcccgt
tattcgaagacggcgaaggtgcagcgactgccgatcgaaccaatcagccaggcgagcgcg
aaccaacgttcgggccgctgcggccgtatcgccgacggcatcgcgatccgcctgtactca
cgtgaggatttcgagacgcgtcccgaattcacggagccggagatcctacgcacgtccttg
ggcgcggtcgccctgcacatgctgtcggtgggcgtggcgcgcaccgcgcgggatgtgacg
gatttcggtttcatcgacccgccggatatgaaggccgtatccgatggtttcaacgagctg
accgaactgaaggccatcgcccgcaagcatggcgaagtggtgttgacgcatacgggccgc
atgctggcgcgcatcccgatcgacgtgcgtttgggccgcatgatcatcgaggccgcgaag
tcaaccacgccgaacacactggccgccgtattggtggtcgtggcgttcctcagcctgcag
gatccgcgcgaacgtcccgatgagaaccgtgaggaggcggaccgcatccacaaccggtat
gcggacccgaccagtgacttcctgaccgcgttgaacctgtgggaccgcgtgttccaagct
gatggcgaaccaagcaattccgcactgcgccgcatctgcaagaccgagtacttgagttgg
ctgcgcatgcgccaatggaaggatctggtcgcccagctgcgcgaaatgtgccgggagttc
aaattcaagctcggcgagccaatccccgtgtcccgcccaccgttggaaatccgccagcta
ccgctcaaccagcaggcagcgcattcgctgtgctgctcatgggacgcgcagggcatccac
acgtccatgctttccggcctgctgtccatgatgggcatgcagatcgtgcgcgagccgaag
gcttccgatttcgccgggctcaagggagcggcacgggcacgcgcgatgaaacgtgcgcag
aagatggcgaagaacgactatcagggcgcgcgcggcacgcatttcgccctgttccccgcc
tccgccgtagccaagtcgaccccgcaatgggtgatgagcaccgaactggtggagacaagc
cggctgtgggcgcggtactccgccgaaatcgacccagcgtgggccgaaccgctcgccgga
gcgttgacgcgcaccacctacgccgatccgcactggtccggttcgcgtggctcggccgtg
gcgagcgcgaaggtgctcctgtacggcctgccgatcgtgcaggaccgcaccgtgcaatgg
gggcgcatcaacccgctcgaggcacgcgacttcctcatccgccaaggcctggtggaaggc
gacatccagcaacggttctcctacgacgatttcgtcatgcggaaccgcgacatcctcgaa
gacgcggccgacgacgcgagccgcacccgccaggtggcgcagaccgtcggcgacgaggac
ctgttcgacttctacaacgccatcatccccaacaccgtcaccagcgtggccgacctggcg
aaatggtggaagacaaggcacgacgagcagcccgacctgctggatttcgacccggacaag
gtggaacgcctcgccgactccgattcggtgtccttggacgactatcccgaccattggcat
acgctcggcaccgacggctcccccatcgacctaaggttgagctacatctacgatccgcac
gacccgaacgacggcgtcaccgtgcacgtgccgttgaaggcgctgtcgcggctgaccccg
gaacagttcacatggaacgtgccgggactgctggacgggctcatcgtcggcatgatcaaa
tcattgccgaaaaccctgcgcgtacagttcgtacccgccccggacacggcacgcaggatc
cgcgcctggatcgacgaacgctaccccgacctacccggctccggaagccagcaaaaacca
aacctggcccccgaaaacgaggatggcgtcgccgcatggcccgacctgccacacgcgttc
acccaagcggccatcagcatcgtcggcgcgcaaatccacccggaagtcctcactggcgaa
ctgtggaacaagctcgcaccatacctgcgcatgaccttcgccgtggaacagcagctgcca
cccaaccgcaagaaccagcacggcagacggcacgcgcgaggccccgtcaaaacactcggc
accggcaaatcactcgtcgatctgcaacgcaaattcgccgagcaggccaaagcgtccgca
cgccacatggtcgagaaacaagcccgaaacgccggagaccaaggcaaaatcgtcgaaaaa
gccaacctgctcaacaaagcgggagcaaccaccgaagcacgcgccaccatgctctggcaa
ggtgcactcgacacgctgcgcctgcccggtgaacgcatctcctcacgctggctcggcacg
gaagcgctcatgctcgcctccgccccctacaagtccacgaaggaactcaccgaagacctg
caattggccgccgtcaaacgactcctgccgaacgtggaccagctgcccgacgacgaagcg
ctcgccaacgcagtgctcgacgtgcgcgaagtgtacgaggacaccgtgtatgcggtggcg
catgacgtgatcgccatactgaaacggtatgcggaagtcgacaaagccgtgtccggcaaa
gccgacctgcccctgctgagcgtgctgcagtcgatccgcgagcacatcgccacgctcgtc
ttccccggtttcatcggcaagacgccaccggacgcattgccgtccatcgaacgatacctg
cacgccgacctgctgcgcctcgccaaggcgaaaaacgacaagaaccgcgatgtgcgctgg
gcatgggaagccgacgaagccaaacaactcgccgacaacaccatggcgaaagcacaacgc
gaaccagccggcccacgccatgaaacactcatgaaacaggccgagaccttgcgctggatg
ctcgaggaattctacgtatccctttgggcgcaggaactcggcacgccgaaaccgatcagc
ctgcaacgcatcaaaaaggccatcgcctag
DBGET
integrated database retrieval system
