Bifidobacterium adolescentis ATCC 15703: BAD_1318
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Entry
BAD_1318 CDS
T00437
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase beta chain
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bad
Bifidobacterium adolescentis ATCC 15703
Pathway
bad03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bad00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BAD_1318 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bad03021
]
BAD_1318 (rpoC)
03400 DNA repair and recombination proteins [BR:
bad03400
]
BAD_1318 (rpoC)
Enzymes [BR:
bad01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BAD_1318 (rpoC)
Transcription machinery [BR:
bad03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BAD_1318 (rpoC)
DNA repair and recombination proteins [BR:
bad03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BAD_1318 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
PEARLI-4
Focal_AT
Motif
Other DBs
NCBI-ProteinID:
BAF40099
UniProt:
A1A316
LinkDB
All DBs
Position
complement(1662954..1666967)
Genome browser
AA seq
1337 aa
AA seq
DB search
MLDVNEFDKLRIGLATADDIRNWSYGEVKKPETINYRTLKPEKDGLFGEQIFGPTRDWEC
ACGKYKRVRFKGIVCERCGVEVTKSRVRRERMGHIELAAPVTHIWFFKGVPSRLGYLLDI
APKDLEKVIYFAAYMVTKVDEEQRHQDLPDLQQEFDNEIANLEKRRNAEIEERAKKVEAD
LAELEAEGEAKGSARAKLRNSAEREMAAIRTRYDEQIQRLSAVFDRFKTLKPGDMEGDVD
LWREMEDRYGDYFEGCMGAEAIKKRLQDFDLEAASKQLREEIDTGTGQRKARALKRLKVV
NAFLTTGNKPEAMVLDVIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIE
LGAPEIMLNNEKRMLQEAVDSLFDNGRRGRPVTGASNRPLKSLSDMLKGKQGRFRQNLLG
KRVDYSGRSVIVVGPSLRMHQCGLPKPMALELFKPFVIKRLVDQGFAQNMKSAKRLVDRA
DSEVWGVLEEVISEHPVLLNRAPTLHRLGIQAFEPILVEGKAIHLPPLACAAFNADFDGD
QMAVHLPLSAEAQAEARSLMMASDNILKPADGHTVTMPSQDMILGLYYLTTVIDGAKGQG
RVFSSLEEAEMALDKHEIDMQAKVLIRLPQDFVLPKDWEPGEVKVVDPEPGSPDVVKEER
FHDGSVLFATSYGRILFNGTLPVDYPFVNEQAPKKRLSKIVDDIATRYSTAQVAATLDAL
KDLGFTRAPWSGVSFAFSDVIQPPELDEYIEKYEGEADKVNENYEIGMLTEEERRQELVD
LWTKCTSEVSEAVEEHFDSKNNLAIIVQSGARGNMMQINQIAGMRGLVANPKGEIIPRPV
KSNYRKGLSVLEYFISQHGARKGLADTALRTAESGYLTRRLVDVSQDVIVREEDCGTKRG
LTMKVGERDAEGNLHLVKAADGGPYSRLLAADVIDPADGETVLYKAGDALSMDVLNDLVA
HGVEEVKARSVLTCESKRGVCAKCYGWSLATNKLVDVGEAVGIVAAQSIGEPGTQLTLRS
FHSGGVASASDITQGLPRVTELFEARTPKGEAPIAEFAGVVKVEDTERGRQVTLKPDDDS
VEPIVYPVTRRAPMLVKDGDHVEAGTQLIEGSVDPKKILRILGPRAAQVNIVEEVHTVYR
SQGVDIHDKHIEVIVHQMLRRITVIDSGDTDLLPGELVDKARFKAANMEAVKNGGKPAAG
RPELMGITKASLATDSWLSAASFQETTRVLTEAALNQKVDDLKGLKENVIIGKLIPAGTG
LARYRNATVEPDKAIRDTIYPNFGLGGEGTDSSFGDTDLSDVDFSNIDFGDLKLGDDFNP
DDFLDDNGGQTDLGDTL
NT seq
4014 nt
NT seq
+upstream
nt +downstream
nt
gtgctggacgtcaacgaatttgacaaactgaggatcggactggccaccgccgacgacatc
cgcaactggagctacggcgaggtcaagaagccggagaccatcaactaccgtaccctgaag
ccggagaaagacggcctgttcggcgagcagatcttcggacctacccgcgactgggaatgc
gcctgcggtaagtacaagcgcgtgcgttttaagggcatcgtctgcgagcgttgtggcgtg
gaagtcaccaagagccgtgtgcgtcgtgagcgcatgggccatatcgagcttgccgctccg
gtgacccacatctggttcttcaagggtgtgccgtcccgtttgggctacctgctggacatc
gctccgaaggatctcgagaaggtcatctatttcgcggcctacatggtcaccaaggtggac
gaagagcagcgtcatcaggacctgccggacctgcagcaggagttcgacaacgagatcgcc
aacctcgagaagcgccgcaacgccgaaatcgaggagcgcgccaagaaggtcgaagccgat
ttggccgagctcgaagccgaaggcgaagccaagggctccgcacgcgccaagctacgcaac
agcgccgagcgtgaaatggccgccatccgtacccgctacgacgagcagatccagcgtctg
agcgccgtgttcgaccgcttcaagaccctgaagccgggagacatggaaggcgacgtcgac
ctgtggcgtgagatggaagaccgctacggcgattacttcgaaggctgcatgggcgccgaa
gccatcaagaagcgtctgcaggacttcgacctcgaggcagcctccaagcagctgcgcgaa
gagatcgacacgggcaccggccagcgcaaggcccgcgctctgaagcgtctgaaggtcgtc
aacgcgttcctgaccaccggcaacaagccggaggccatggtgctcgacgtgatcccggtc
atcccgccggacctgcgcccgatggtgcagctcgacggtggccgcttcgccacctccgac
ctcaacgacctctaccgtcgtgtgatcaaccgtaacaaccgtctgaagcgtctcatcgag
ctcggcgccccggagatcatgctcaacaacgagaagcgcatgctccaggaagccgtcgac
tccctgttcgacaacggccgtcgtggccgtccggtcaccggcgcttcgaaccgtccgctc
aagtccctgagcgacatgctcaagggcaagcagggccgtttccgtcagaacctgctcggt
aagcgtgtggattactctggccgttccgtgatcgtggtcggcccgtccctgcgcatgcac
cagtgcggtctgccgaagccgatggccctcgagctgttcaagccgttcgtcatcaagcgc
ctcgtggaccagggcttcgcgcagaacatgaagagcgccaagcgcctcgtggaccgcgcc
gactccgaagtatggggcgtgctcgaagaggtcatctccgagcatccggtgctcctgaac
cgtgcacctacgctgcaccgtctgggcatccaggcattcgagccgatcctggtggaaggc
aaggccatccacctgccgccgcttgcctgcgccgcattcaacgccgacttcgatggcgat
cagatggcagtccacctgccgctgtccgccgaagcccaggctgaggcccgttccctgatg
atggcttccgacaacatcctgaagccggcagacggccacaccgtgaccatgccgagccag
gacatgatcctcggtctgtactacctgaccaccgtcatcgacggcgccaagggccagggc
cgcgtgttctcctcgctggaagaggccgaaatggcgctcgacaagcacgagatcgacatg
caggccaaggtgctcatccgccttccgcaggacttcgtgctgccgaaggactgggagccg
ggcgaggtcaaggtcgtcgatccggaaccgggcagcccggacgtggtcaaggaggagcgt
ttccatgacggctccgtcctgttcgccacctcctacggccgtatcctgttcaacggcacc
ttgccggtcgactacccgttcgtcaacgagcaggcgccgaagaagcgtctgagcaagatc
gtcgacgacatcgcgacccgttactccaccgctcaggtggccgcgacactggacgccctg
aaggatctgggcttcacccgcgcaccgtggtccggcgtgtccttcgcgttctccgacgtt
atccagccgccggaactggacgagtacatcgaaaagtacgaaggcgaagccgacaaggtt
aacgagaactacgaaatcggtatgctcaccgaagaggagcgtcgtcaggaactggtcgac
ctgtggaccaagtgcaccagcgaggtctccgaggcggttgaggaacacttcgattccaag
aacaacctggccatcatcgtgcagtccggtgcacgaggaaacatgatgcagatcaaccag
atcgcaggtatgcgaggcttggtggcaaacccgaagggcgagatcattcctcgaccggtc
aagtccaactaccgtaagggcctgtccgtgctggaatacttcatctcccagcacggcgcg
cgtaagggtctggccgataccgcactgcgtaccgcagagtctggctacctgacccgtcgt
ctggtggacgtctcccaggacgtgatcgtgcgcgaggaggactgcggcaccaagcgcggc
ctgaccatgaaggtcggcgaacgcgatgccgaaggcaacctgcacctggtcaaggccgcc
gacggtggcccgtactcccgtctgctcgcggccgacgtcatcgacccggccgacggcgag
accgtgctgtataaggccggcgacgccctgtccatggacgtgctcaacgatctcgttgcc
cacggtgtggaagaggtcaaggcccgttccgtgctgacctgcgaatccaagcgtggcgtg
tgcgccaagtgctacggctggtccctggccaccaacaagctggtggacgtcggcgaggcc
gtcggcatcgtggcagcacagtccatcggtgagcctggtacccagctgacgctgcgttcc
ttccactccggcggcgtcgcttccgcttccgatatcacccagggtcttccgcgtgtcacc
gagcttttcgaagcccgtaccccgaagggcgaggctccgatcgcggagttcgccggcgtg
gtcaaggtggaagacaccgagcgcggccgtcaggtcaccctgaagccggacgacgactcc
gtcgagccgatcgtctacccggtgacccgtcgtgcgccgatgctggtcaaggacggcgac
catgtcgaagccggcacccagctcatcgaaggctccgtcgacccgaagaagatcctgcgc
atcctcggcccgcgcgccgcacaggtgaacatcgtggaggaagtgcacaccgtgtaccgc
tcccagggcgtggatatccacgacaagcacatcgaggtcatcgtgcaccagatgctgcgt
cgcatcactgtgatcgactccggcgacaccgacctgctgccgggcgaactcgtggacaag
gcacgcttcaaggccgccaacatggaagccgtgaagaacggtggcaagccggccgccggc
cgtccggagctgatgggcatcaccaaggcttcgctggccaccgattcctggctgtccgcg
gcctccttccaggagaccacccgcgtgctcaccgaagccgccctgaaccagaaggtcgat
gacctgaagggcctcaaggagaacgtcatcatcggtaagcttatcccggcaggtaccggc
ctcgcccgttaccgcaatgccacggtggagcccgacaaggccatccgcgacaccatctac
ccgaacttcggtttgggcggcgaaggcaccgacagctccttcggcgacaccgacctgtcc
gatgtggacttctccaacatcgacttcggcgacctgaagctgggcgatgacttcaacccg
gatgacttcctggacgacaacggcggccagaccgatctgggcgacaccctgtga
DBGET
integrated database retrieval system
