Bifidobacterium adolescentis 22L: BADO_0268
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Entry
BADO_0268 CDS
T03260
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
badl
Bifidobacterium adolescentis 22L
Pathway
badl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
badl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BADO_0268
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
badl03019
]
BADO_0268
03016 Transfer RNA biogenesis [BR:
badl03016
]
BADO_0268
Enzymes [BR:
badl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
BADO_0268
Messenger RNA biogenesis [BR:
badl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
BADO_0268
Transfer RNA biogenesis [BR:
badl03016
]
Prokaryotic type
tRNA degradation factors
BADO_0268
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
KH_1
RNase_PH_C
KH_2
PCB_OB
DUF1773
S1_2
Motif
Other DBs
NCBI-ProteinID:
AII75694
UniProt:
A0A076JL31
LinkDB
All DBs
Position
353931..356609
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AA seq
892 aa
AA seq
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MEGPEIKAVEAVIDNGSFGKRTLRFETGRLAQQADGAVAAYLDDDSMILSTTTAGSSPKE
NYDFFPLTVDVEEKMYAAGKIPGSFFRREGRPSSEAILACRIIDRPLRPLFPHTLRNEVQ
VVETVLAVNPDDAYDVVALNAASASTMISGLPFEGPVSGVRLALIDGQWVAFPRWSERER
AVFEIVVAGRVVENGDVAIAMIEAGAGKNAWHLIYDEGQTKPDEEVVAGGLEAAKPFIKV
ICEAQAELKKIAAKETKEFQLFPEYTEDLYNRIDEIAHADLDEALSIAEKLPRQDRIHEI
KEGVKATLAEEFTDMDDAEKDKEIGNAFKELQRQIVRRRILTQDYRIDGRGLRDIRTLSA
EVDIVPRVHGSALFQRGETQILGVTTLNMLKMEQQIDALSGPQSKRYMHNYEMPPYSTGE
TGRVGSPKRREIGHGALAEKALVPVLPSREEFPYAIRQVSEAIGSNGSTSMGSVCASTLS
LLAAGVPLKAPVAGIAMGLVSGDVDGQHIYKTLTDILGAEDAFGDMDFKVAGTSEFITAL
QLDTKLDGIPADILASALQQAKEARTTILEVINECIDGPAEMSPYAPRIITTTVPVDKIG
EVIGPKGKMINQIQEDTGAEIAIEDDGTVYISSEGGEAAEKAKEIIDQIANPHVPEAGET
YNGKVVKTTSFGAFVNLTPGTDGLLHISQIRNLANGERIDAVEDVLKEGDTVEVVVQGVD
DRGKISLAIPGFEDQESSAPRRDRGDRDDRRGGRGRRDDRRRSDDRDDRDYDDRPRRRRS
DRDDDRDYDDRPRRRRSDRDDRDYDRDGRRSSRSDRDDRDYDDRPRRRRSDRDDRDYDRD
DRRSDRRRGSRRDDRNPRYAADENYDEYRADREERSERPRRRVRRDFDPFED
NT seq
2679 nt
NT seq
+upstream
nt +downstream
nt
atggagggtcccgaaatcaaggctgttgaagccgtaatcgataatggttcattcggcaag
cgcacgctgcgcttcgagaccggtcgtctcgcccagcaggcggatggtgccgtcgccgcc
tatcttgacgatgattcgatgattctgtccacgaccaccgccggttccagcccgaaggag
aactacgacttcttcccgctgaccgtggatgtggaagagaagatgtacgcagccggcaag
atcccgggctcgttcttccgccgcgaaggccgtccgagctccgaagccatcctggcctgc
cgcatcatcgaccgtccgttgcgtccgctgttcccgcacaccctgcgcaacgaagtgcag
gtcgtcgaaaccgtgctcgccgtcaacccggatgacgcatacgacgtcgtcgcactgaac
gccgcctccgcctccaccatgatctccggcctgccgttcgaaggcccggtctccggcgtg
cgtctggccctgatcgacggccagtgggtcgccttcccgcgctggagcgagcgcgaacgc
gccgtgttcgaaatcgtggtcgccggccgcgttgtcgagaacggcgacgtcgccatcgcc
atgatcgaagccggtgccggcaagaacgcatggcacctcatctacgacgaaggccagacc
aagccggacgaggaagtcgtcgccggcggtcttgaagccgccaagccgttcatcaaggtg
atctgcgaggcccaggccgagctcaagaagatcgccgcgaaggaaaccaaggaattccag
ctcttcccggagtacaccgaggatctgtacaaccgcatcgacgagatcgcccacgccgac
ctcgacgaagccctgtccatcgccgagaagctgccgcgtcaggatcgcatccacgaaatc
aaggaaggcgtgaaggccactctcgcggaagagttcaccgacatggacgatgccgagaag
gacaaggaaatcggcaacgccttcaaggaactgcagcgtcagatcgtccgccgccgcatc
ctgacccaggactaccgcatcgacggccgtggcctgcgcgatatccgtacgctgtccgcc
gaagtggacatcgtgccgcgcgtgcatggttccgcgctgttccagcgcggcgagacccag
attctgggcgtcaccacgctgaatatgctcaagatggagcagcagatcgacgcgctgtcc
ggcccgcagtccaagcgttacatgcacaattacgaaatgccgccgtactccaccggtgag
actggccgcgtcggctccccgaagcgccgcgagatcggccatggcgccctcgccgagaag
gccctcgtgccggtgctgccgagccgtgaggagttcccgtacgccatccgtcaggtctct
gaggcaatcggctccaacggttccacctccatgggttccgtctgcgcctccacgctgtcc
ctgctcgccgctggcgttccgctgaaagctccggtcgcaggcatcgccatgggcctcgtg
tccggcgacgtcgacggccagcacatctacaagacgctcaccgacatcctcggcgccgaa
gacgccttcggcgacatggacttcaaggtggccggcacctccgaattcatcaccgccctg
cagctcgacaccaagctcgacggcattccggccgacatcctggcgtccgccctgcagcag
gccaaggaagcccgcaccaccatcctcgaagtcatcaacgagtgcatcgacggcccggcc
gagatgagcccgtacgcgccgcgcatcatcaccaccaccgttccggtggacaagatcggc
gaggtcatcggcccgaagggcaagatgatcaaccagatccaggaagacaccggcgccgaa
atcgccatcgaggatgacggcaccgtgtacatctcctccgaaggcggcgaggccgccgag
aaggccaaggagatcatcgaccagatcgccaacccgcacgtgccggaagccggcgagacc
tacaacggcaaggtcgtgaagaccacctccttcggcgccttcgtgaacctgaccccgggc
accgacggtctgctgcacatctcccagatccgcaacctcgccaacggcgagcgcatcgac
gccgtcgaagacgtgctcaaggaaggcgacaccgttgaggtggtcgtgcagggtgttgac
gatcgcggcaagatctcccttgccatcccgggcttcgaggatcaggaatcctccgctccg
cgccgcgaccgtggcgatcgcgatgaccgccgtggcggccgtggacgtcgtgacgaccgc
cgtcgttccgatgatcgcgatgatcgcgattatgatgatcgtccgcgtcgccgccgttcc
gaccgcgatgacgatcgtgattatgatgatcgtccgcgtcgccgtcgttccgaccgtgac
gatcgcgactacgatcgtgacggccgccgttcgtcccgttccgatcgcgatgatcgtgat
tatgatgatcgtccgcgtcgccgtcgttccgatcgcgatgaccgtgactacgatcgcgat
gaccgccgttccgaccgtcgccgtggtagccgtcgtgacgaccgcaacccgcgttacgcc
gccgacgagaactacgacgagtaccgtgccgatcgcgaagagcgctccgagcgtccgcgt
cgccgcgtgcgccgcgactttgatccgttcgaagactga
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