Bifidobacterium adolescentis 22L: BADO_0504
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Entry
BADO_0504 CDS
T03260
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
badl
Bifidobacterium adolescentis 22L
Pathway
badl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
badl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BADO_0504
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
badl03019
]
BADO_0504
03400 DNA repair and recombination proteins [BR:
badl03400
]
BADO_0504
Enzymes [BR:
badl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BADO_0504
Messenger RNA biogenesis [BR:
badl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BADO_0504
DNA repair and recombination proteins [BR:
badl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BADO_0504
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
HRDC
Helicase_C
RQC
RecQ_Zn_bind
Helicase_Sgs1
ResIII
Motif
Other DBs
NCBI-ProteinID:
AII75928
UniProt:
A0AAW5JYE0
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All DBs
Position
641276..643231
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AA seq
651 aa
AA seq
DB search
MTQAVDSADSVDPRALEALNRYFGYDSFRPGQSGIVSAILTGHDVLGVMPTGAGKSICYQ
IPAAILPGVAIVISPLISLMRDQVDALNDVGLPAAFINTTQTPDEQDLVFAQALSGQIKL
LYVAPERLETERFRNFAVRVPISLVAVDEAHCVSQWGQDFRSSYLGIGEFIAGLPTRPTV
AAFTATATERVRRDIVSILGLHTPSITVTGFDRPNLYFDVISMPRKDKASWVASYIASHP
DESGIVYCATRKETEALAESLNSAVAELRAAGGADVSDIGTIAVAYHGGMSADAREKAQR
DFVTDRVPVVVATNAFGMGIDKSNVRFVIHHNMPESIEAYYQEAGRAGRDGEPSRCTLLW
NESDIVTRRRLLDSDYENERLTPEEQEAVRASKRRLLDAMVGYCRTTDCLHAYMTRYFGE
TAGAAAKTDGKCVGGCANCEHTFETIDVTDIARAISRCVHDVNQHVGSGKIVKVLRGSKA
QDLSYLNPESLLSFGMLDEVPEARIRDVLSQMATDGFLTIAEGRLPIVGFGPRAAETVAP
EFHYDIKKIKRADARARRTPDVSTPAVGSYVPDDGDEALFQKLRALRLDIARELGKPPYI
VFSDKTLRDMVRVKPITDDQFLAVNGVGESKLKQYGERFMAAIREDSGDEA
NT seq
1956 nt
NT seq
+upstream
nt +downstream
nt
atgacgcaagctgttgattccgccgattccgtagacccccgcgcattggaggcgctgaac
cgctatttcggctacgattcgttccgtcctggacaatccggcatcgtctcggccatcctc
accggacacgacgtgcttggcgtcatgcccaccggcgccggcaaatccatctgctatcag
attcccgcagcgatcctgccgggcgtcgccatcgtcatctcgccgctgatctcactcatg
cgcgaccaggtcgacgccctgaacgacgtgggccttccggccgcgttcatcaacaccact
cagacgccggacgaacaggatctcgtcttcgcgcaggcgctctccggccagatcaaactg
ctgtacgtggcgccggaacgtttggaaaccgaacgattccgcaacttcgccgtccgtgtg
ccgatctcgctcgtcgccgtcgacgaagcgcactgcgtctcccaatgggggcaggacttc
cgttcctcatatcttggcatcggcgaattcatcgccggactgcccacacgtccaacggtc
gccgcgttcaccgccaccgccaccgaacgcgtgcgccgcgacatcgtttcgattctgggt
ctgcacacaccgtccatcaccgtcaccggtttcgaccggccgaacctgtatttcgacgtc
atcagcatgccacgcaaagacaaagcatcctgggtggcgtcctacatcgccagccatccg
gacgaatccggcatcgtctactgcgccacgcgcaaggaaacggaagcgctcgccgaatcg
cttaacagcgccgtcgccgaattgcgtgccgcagggggtgcggatgtgtcggatatcggc
accatcgccgtcgcctaccatggcggtatgagcgccgacgcacgagagaaggcgcaacgc
gatttcgttaccgaccgtgtgcccgtggtcgtggccaccaacgcgttcggcatgggcatc
gacaaatccaacgtgcggttcgtcatccaccacaacatgcccgaatccatcgaagcgtac
taccaggaggcgggtcgcgccggacgagacggcgaaccaagccgctgcacgctgttgtgg
aacgaatcggacatcgtcacccgccgccggctgctcgattcggactacgaaaacgaacga
ttgactcccgaagagcaggaggccgtacgcgcgtcgaaacgccggctgctcgacgcgatg
gtcggctactgccgtaccacggactgcctgcacgcgtacatgacccggtatttcggcgaa
accgcgggcgcggcggcgaaaacggacggcaaatgcgtgggcggttgcgccaactgcgag
cacacattcgaaaccatcgacgtcaccgacatcgcccgagccatcagccgttgcgtgcac
gatgtgaaccagcatgtcggcagcggcaaaatcgtcaaggtgctgcgcggctcgaaggca
caggatctaagctatctcaaccccgaaagcctgctgtcgttcggcatgctcgacgaagtg
ccggaagcgcgcatccgcgacgtgctgagccagatggccaccgacggcttcctgacgatc
gcggaaggacgcctgccgatcgtcggcttcggaccccgtgcggcggaaacggtcgcaccc
gaattccattacgacatcaagaagatcaaacgtgctgacgcccgtgcgcgtcgaacgccc
gacgtgtccactcccgctgtcggatcgtacgtgccggatgacggcgacgaggcgctattc
cagaagctgcgtgcgctgcgactggacatcgcgcgcgaactcggcaaaccgccgtacatc
gtgttctccgacaagacgttgcgtgacatggtacgggtcaagccgatcactgacgaccag
ttccttgccgtcaacggtgtgggggaaagcaagctcaaacagtacggcgaacggttcatg
gccgcgattcgggaggattccggcgacgaggcttga
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