Bifidobacterium adolescentis 22L: BADO_1419
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Entry
BADO_1419 CDS
T03260
Name
(GenBank) ATP-dependent DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
badl
Bifidobacterium adolescentis 22L
Pathway
badl03420
Nucleotide excision repair
badl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
badl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BADO_1419
03430 Mismatch repair
BADO_1419
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
badl03400
]
BADO_1419
Enzymes [BR:
badl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BADO_1419
DNA repair and recombination proteins [BR:
badl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BADO_1419
MMR (mismatch excision repair)
Other MMR factors
BADO_1419
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
UvrD_C_2
AAA_30
DEAD
Motif
Other DBs
NCBI-ProteinID:
AII76827
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All DBs
Position
1730555..1734640
Genome browser
AA seq
1361 aa
AA seq
DB search
MSTNGATAKGDAMGTVPAATPKFTDSPEQAAVIQAPSYEDVVVVAGAGSGKTYTMTRRII
TLIDQGISPEKILGLTFTRKAASELLSRVSAAVTRNQAGRGTRVAFLKPEVSTYDAFFQT
IVRQYGLLVGFDQNTQPLSEAGALQLIHTVLDKHMDQLMAFDQGGDELGKFSTIAGNVFT
LSNAIAGAMIGSDCTSFDEAVERVRAWDKAFVAQVAKALEDEDVPDDEPKVGKAPKQKKK
ESDTAFETRMREYRAQCHQLCVYKTAQLAGTARKRDLLLDLVADYHAEKRALNMAEFSDF
TIAAFQLVTRFPSIGATYRKRYTHVLLDEYQDTSTTQAALLTALFHADSTHRSAVNAVGD
PFQSIYAWRGASPGAFRMLQHDFGHDATDKPYTLTVTRRNSRMVLEAANNLTKPLRLPAR
RRGSSLMREVDVPPLANIDNASEGTLGVLGYATFGQEIDAIVRFAKQAIALHTPTENELA
DGVKDNRPHVALLFRSKTQMPAYEDALEQAGLTTLVVGQAALLERPEIKDILALLHVVCD
HTDSAALMRLLATPRFGLSADDLQALAGIAERLNTAQRYRALVSAGIVEADANPSDADIR
ATVRAYRDQVPNAVFLIDVLLRGDLRHLVDGVLSRTGAASVIHAGRVIQQVQRTAGHPLP
EVVRTAITALGLDIDLLLAERMRHPDAGNRATSHAASSLDAMLSLVDTYLQEIAAQGTPS
LRAFISWVDSLRDASDDNATAPDTPVDVVLMTVHQSKGLEWDAVAVVGMRDGTFPSSQGD
HLSVKTDEDHPGGRRDGVWEPPEYFEKAHTWLEDPSAVPVPVRADADILPRFPHDAPIGG
NPVESLDGLDDAEVIDDEVFGTLRTMAVDDMEGMDPASLYLTQQEEYGRRLHADERRLAY
VALTRARYEALLVYSGCNETSRDSRLAEGKKSAAPSNFWLETRDSMNGIVTAVREPDNLS
DDVDGSPHTLGLDLPDGYFVGEHARDFENAVVGDAWNTPLEPVSDDHTLPWPCDLSADVA
DKLRAAAEQVRAVESDEPNIAESTGTQGDVADESATPSPETGNSLLRLAKLLVADEHLMP
EPDAADAGESQDAFDEAVRAKGERILAAGRQNVTSLQARAGSMGERDSRAYWRGLVRPIP
HVASPAAQLGTRFHAWAERFIMADADVDGIGGTEGAAGMAAQSRAELIALIGDTQVDADN
GGVQSQDAPSQDAQLRDERKLAAWQRRLVASPWAKRRPAWAERQLVVDMSQLGTIVNGKL
DAVFFGGLDETDEMKRYTVVDWKTGVKPRKPDEIKEKLAQLDLYRLLLAAMEGVPLDAID
ACLYYVSEPHEADRELDALDKTEEEILAELSYGIPQQSDND
NT seq
4086 nt
NT seq
+upstream
nt +downstream
nt
atgtcaacgaacggggccacagcaaagggcgatgcgatgggcactgtgccggccgccacg
ccgaaattcaccgacagtccggaacaggccgccgtcatccaagccccctcatacgaggac
gtggtcgtggtggcgggcgccggctccggcaaaacctacaccatgacccgccgcatcatc
accctcatcgaccagggcatcagtcccgagaagattctgggcctgaccttcacacgcaaa
gccgcctccgaactgctttcgcgcgtctccgctgccgtgacacgcaaccaagccggacgc
ggtacacgcgtcgccttcctcaaaccggaagtctccacctatgacgcgttcttccaaacc
atcgtgcgccaatacggcctgctcgtcggcttcgaccaaaacacgcagccattgagcgaa
gccggagcgctgcagctcatccacaccgtgctcgacaagcacatggaccagctcatggcc
ttcgaccaaggcggcgacgaactcggcaaattctccaccatcgccggcaacgtgttcacc
ctatccaacgccatcgcaggagccatgatcggcagcgactgcaccagcttcgacgaagcc
gtggaacgcgtgcgcgcatgggataaggcgttcgtggcgcaagtggccaaagcgcttgaa
gacgaggacgttcccgatgacgagccgaaagtgggcaaggctccgaaacagaagaaaaag
gaatccgacaccgccttcgaaacccgcatgcgcgaataccgcgcccaatgccaccaactc
tgcgtctacaagaccgcgcaattggccggcacggcccgcaaacgcgacctgctactcgac
ctcgtggccgactaccacgccgaaaaacgcgccctcaacatggccgaattcagcgacttc
accatcgccgcattccaactcgtcacccgattcccctccatcggagccacctaccgcaaa
cgctacacgcacgtgctgctcgacgaataccaagacacctccaccacgcaggcggccctc
ctgaccgcactgttccacgccgattccacccatcgcagcgcggtgaacgccgtcggcgac
cccttccaatcgatctacgcatggcgaggagccagcccaggcgcattccgcatgctgcaa
cacgacttcggccacgacgccaccgacaagccctacacgctgaccgtcacccgacgtaac
tcgcgcatggtgctcgaagcggccaacaatctgacgaaaccattgcgcctgcctgccaga
cgtcgcggcagttcgcttatgcgcgaagtggacgtgcccccgctcgccaacatcgacaac
gcctccgaaggtacgctcggcgtgctcggctacgccacattcggccaggaaatcgacgcc
atcgtacgcttcgccaaacaagcgatcgcactgcacacgccaaccgaaaacgagctcgcc
gacggagtcaaagacaaccgtccgcacgtggcgctcctgttccgctccaaaacgcagatg
ccagcctacgaggacgcactggaacaagccggcctcaccacactcgtcgtcggccaggcc
gcactcctggaacgtcccgaaatcaaagacatcctcgccctgctgcacgtcgtatgcgac
cacaccgacagcgctgcgctcatgcggctgctcgccacgccacgattcggtctgtccgcc
gacgatctgcaggcgctcgccggcatcgccgaacggctcaacaccgcgcaacgctaccgc
gcgctcgtgtcggccggcatcgtggaggcggatgcgaatccgtccgacgccgacatccgc
gccaccgtgcgcgcctaccgcgaccaagtgcccaacgccgtcttcctgatcgacgtgctg
ctgcgcggcgatctgcggcacctcgtcgacggcgtattgagccgtacgggagccgcgagc
gtcattcacgccggtcgcgtcatccaacaggtgcagcgcacggccggccatccgttaccg
gaagtggtacgcacggccatcaccgcgctcggactggacatcgacctgctgctcgccgaa
cggatgcggcatccggatgccggcaatcgtgccacatcgcatgccgcttcgtcactcgac
gcgatgttgtctctggtggacacctacttgcaggaaatcgccgcgcagggcacgccaagc
ctgcgcgcgttcatctcgtgggtggattcgctgcgtgacgcgtccgacgacaacgccacc
gcaccagatacccccgtcgatgtggtgctcatgaccgtgcaccagtcgaaaggcctggaa
tgggacgccgtggccgtggtcggcatgcgcgacggcaccttcccgtccagtcaaggcgac
cacctgagcgtcaaaacggacgaagaccatccgggcggtcggcgcgacggcgtatgggag
ccgccggaatacttcgaaaaagcccacacttggctggaagacccgtccgcggtgccggtt
ccggtgcgcgccgacgcggatatcctgccacgattcccgcacgacgcgcccatcgggggc
aatcccgtggaatcgctcgacggattggacgatgcggaagtgatcgacgacgaggtgttc
ggcaccttgcgaaccatggccgtcgacgatatggaaggaatggatccggcaagcctgtac
ctgacgcaacaggaggaatacggccgccgactgcacgccgacgaacgccgtctcgcctac
gtggcgttgacgcgcgcccgctacgaggcgctgctcgtatacagcggatgcaacgagacg
agccgcgactcccgcctggcggagggaaagaaaagcgccgcgccgtcgaatttctggctg
gagacgcgcgattcgatgaacggaatcgtcaccgcggtacgcgaaccggacaacctgtcc
gacgatgtggacggctccccgcacacgctgggacttgacctgcccgacggctatttcgta
ggcgaacacgcccgcgatttcgagaatgccgtggtgggcgatgcgtggaacacgccgctc
gaaccggtctcggacgaccatactttgccttggccgtgcgatctgagcgccgatgtcgcc
gacaagctgcgtgccgcggccgaacaggtacgtgccgtcgaatccgacgaaccgaatatc
gctgaatccacgggaacgcagggcgacgttgccgatgaatccgccacgccatcgccggaa
accggaaactcactgctgcgtctcgccaaactgctcgtcgccgacgaacatctcatgccg
gaaccggacgcggctgacgcaggcgaatcgcaggacgccttcgacgaggccgtgcgtgcc
aaaggcgaacgtatccttgctgccggccgccaaaacgtcacctcgctgcaagcgcgcgcc
ggctccatgggcgagcgtgactcccgcgcctactggcgtggtctggtccgtccgattccg
cacgtcgcctcgccggcggcacagctcggcacgcggttccacgcatgggctgagcgtttc
atcatggcggatgcggacgtcgacggcatcggtggtacggaaggtgctgccggtatggcc
gcgcagtcgcgtgcggaactgatcgcattgataggtgatacgcaagtcgacgcggacaac
ggcggcgtgcaatcgcaggacgcaccatcgcaggacgcccaattgcgagacgaacggaaa
ctggccgcttggcagcgtcgtcttgtcgcttcgccgtgggcaaaacgacgtccagcatgg
gcggaacgccagctcgtcgtcgacatgtcccagctcggcaccatcgtcaacggcaaactc
gacgcggtgttcttcggcggtctcgacgaaacggacgagatgaaacgctacaccgtggtc
gattggaaaaccggcgtaaaaccacgcaaaccggacgaaatcaaggagaagctcgcacag
ctcgacctgtaccgcctgctgctcgcggcgatggaaggggttccgttggatgcaatcgac
gcctgtctctactatgtgagtgagcctcacgaggccgatcgggagcttgacgccctcgac
aaaacagaagaagagatccttgccgagttgagctacggaattccgcagcaatccgacaac
gactag
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