Bifidobacterium adolescentis BBMN23: BBMN23_0268
Help
Entry
BBMN23_0268 CDS
T03774
Name
(GenBank) ribonuclease G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
bado
Bifidobacterium adolescentis BBMN23
Pathway
bado03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bado00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BBMN23_0268
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bado03019
]
BBMN23_0268
03009 Ribosome biogenesis [BR:
bado03009
]
BBMN23_0268
Enzymes [BR:
bado01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
BBMN23_0268
Messenger RNA biogenesis [BR:
bado03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BBMN23_0268
Ribosome biogenesis [BR:
bado03009
]
Prokaryotic type
rRNA processing factors
BBMN23_0268
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
AJE05240
LinkDB
All DBs
Position
330122..332830
Genome browser
AA seq
902 aa
AA seq
DB search
MSADPAPRRRRGGRRVVRGVGAAGASLELKVEEHAKAPLFEEPKLEPVQPARDSADFNDA
DDAEPSRPRRRRVTRYDDDDEMRDERPRRRRRSSVDVQDEDDRPSRRRRRISDEPRDDRD
DRDDYGNRGNRDESSEDRALDAVSALPEGHETRHNPRPMTSLLFQEPILPAAPAGRGSSD
DDDADDTGRRGSDDARDSRDDRDDDRPTRRRRRRSHDTADTDRTDASNDGRGRDDGNDRN
NDAEDDDHGDSRRSRRSRRLNAQERRAAAEVEQIEEDLVLDGITYAPIDDESRNGNDDDD
EQPTRTRRRRRGRGNHEEADEQQTSERESRRRHEDDDEEEGTVTRRRRRRRGGSKAEESD
ETMSRRSRKQQYIDEITDVEGSTRLEAKKQRRRDNRRERSRQNQLMEQDFLARREHVERL
MVVRERERHTQISVIEDNVLVEHYVSDIQEVATVGNIYLGRVQNVLPSMEAAFVDIGQAR
NGVLYAGEVNWDSARLEGQPRRIELAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAGRFL
VLVPSGGMTGVSRKLSERERARLKNIVSKIAPKDMGVIIRTAAEGASEEAITKDLENLVR
QWERITAKRDEFLHGKRPKLLQGEPDVAIRVVRDIFNDDFSKMIVEGDRVYERIEEYLDT
MAPDLKDKLEKWDPAEHDGKDVFDKWQIDSQLRKGMERQVYLPSGGSIVIDRTEAMTTID
VNTGRFIGRGKSLEETVTRCNLEAAEEIARQLRLRDIGGMVMIDFVDMVMPANRDLVLRR
LVECLARDRTKHQVAEVTSLGLVQMTRKRIGQGLVEAFSEECPTCKGRGFILHDEPTVSA
DYDDPYALKGGDPFVKTNKHGHGTDVQVPKGSSPDVKAKLAQIAAAAVAANNADLGEEEQ
EE
NT seq
2709 nt
NT seq
+upstream
nt +downstream
nt
gtgtctgccgatccggctccgcgccgccgtcgtggaggtcgccgcgtggtgcgtggcgta
ggtgccgcgggcgcgtctttggagctgaaggtcgaggagcatgccaaagcccccttgttt
gaggaaccgaagcttgagcctgtccagcctgcgcgtgattccgccgatttcaatgatgcc
gatgacgccgagccgtcgcgtccgcgtcgtcgtcgcgtgacccgttacgatgacgacgat
gagatgcgtgacgaacgtccgcgccgtcgccgtcgttcctctgtggacgtgcaggacgag
gatgatcgcccgtcgcgtcgccgtcgccgtatcagcgacgagccgcgtgatgaccgtgac
gatcgtgacgattacggcaatcgtggcaatcgtgacgaatcatccgaagaccgtgcgctc
gacgccgtcagcgcgctgccggaaggccatgagacgcgtcataatccgcgtccgatgacg
tcgctgctgttccaggagccgattctgccggccgcccccgcgggccgcggatcgtccgac
gatgacgatgctgacgatacgggccgcagaggttcggacgatgcccgtgacagccgtgat
gaccgcgacgatgaccgtccgactcgtcgtcgccgccgtcgcagccacgacacggccgac
acggaccgcacggacgcttcgaatgacggtcgcggccgtgatgatggcaatgaccgcaac
aacgacgccgaagacgatgatcatggcgattcccgtcgttcccgtcgttcccgtcgtctg
aacgcgcaggaacgtcgtgccgctgccgaagtggagcagatcgaggaggacctggtcctc
gatggcatcacgtatgcgccgatcgatgacgagtcccgcaatggaaacgatgatgatgac
gagcagccgacgcgcacccgtcgccgccgtcgcggacgcggcaaccatgaggaagccgac
gagcagcagacctccgaacgcgaatcccgtcgccgtcatgaggatgacgatgaggaagag
ggcacggtgacccgtcgccgtcgccgccgccgtggagggtcgaaggccgaggaatcggac
gagacgatgtcccgtcgctcccgcaagcagcagtacatcgacgaaatcaccgacgtcgaa
ggatccacccgtctggaagccaagaagcagcgccgccgcgacaaccgtcgtgaacgcagc
cgtcagaaccagctcatggagcaggacttcctggcccgtcgcgaacacgtcgagcgtctg
atggtggtgcgcgaacgtgagcgccacacccagatctccgtgatcgaagacaatgtgctc
gtcgagcattacgtgtccgacatccaggaagtggccaccgtcggcaacatctatcttggc
cgcgtgcagaacgtgctgccgagcatggaggccgcgttcgtggacatcggacaggcccgc
aacggcgtgctgtacgccggcgaggtgaactgggattccgcacgtctggaaggccagccg
cgtcgtatcgaactggcgttcaagtcgggcgatccggtgctggtgcaggtaaccaaggat
ccgatcggccacaagggcgcaaggcttacctcgcaggtcaccttggccggccgtttcctc
gtgctggtgccgtccggcggcatgaccggcgtgagccgcaagctgagcgagcgtgagcgc
gcccgcctgaagaacatcgtgtcgaagatcgcgccgaaggatatgggcgtgatcatccga
accgcggccgaaggcgcttccgaagaggccatcaccaaggatctcgagaacttggtgcgc
cagtgggaacgcatcaccgccaagcgcgacgagttcctgcacggcaagcgtccgaagctg
ttgcaaggcgagccggacgtggctatccgcgtggtgcgcgacatcttcaacgacgacttc
tccaagatgatcgtggaaggcgaccgcgtgtacgagcgtatcgaggaatacctcgacacg
atggctcccgacctgaaagacaagctcgagaagtgggatccggccgaacatgacggcaag
gacgtgttcgacaagtggcagatcgactcccagttgcgtaagggcatggaacgtcaggtc
tacctgccgtccggcggttcgatcgtcatcgaccgcaccgaggccatgaccaccatcgac
gtgaacacgggccgtttcatcggccgcggcaagagcctcgaggaaacggtgacccgttgc
aacctcgaagcggccgaagagatcgcgcgacagcttcgtctgcgcgacatcggcggcatg
gtgatgatcgacttcgtcgacatggtcatgccggccaacagggatttggtgctccgccga
ctggtggagtgcctggcgcgcgaccgcaccaagcatcaggtggccgaagtcacctcgctg
ggactggtgcagatgacgcgcaagcgcatcggccagggtctggtggaggcgttctccgag
gaatgtccgacctgcaagggccgcggcttcatcctccatgacgaaccgaccgtttcggcg
gattacgacgatccgtacgccctgaagggcggcgatccgttcgtcaagaccaacaagcat
ggccatggcacggacgtgcaggtgccgaagggctcctcgccggacgtgaaggccaaactc
gcgcagatcgcggcggcagccgtggccgccaacaatgcggacctgggcgaggaagaacaa
gaagaataa
DBGET
integrated database retrieval system
