Bifidobacterium adolescentis BBMN23: BBMN23_1427
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Entry
BBMN23_1427 CDS
T03774
Name
(GenBank) ATP-dependent DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
bado
Bifidobacterium adolescentis BBMN23
Pathway
bado03420
Nucleotide excision repair
bado03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bado00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BBMN23_1427
03430 Mismatch repair
BBMN23_1427
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bado03400
]
BBMN23_1427
Enzymes [BR:
bado01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BBMN23_1427
DNA repair and recombination proteins [BR:
bado03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BBMN23_1427
MMR (mismatch excision repair)
Other MMR factors
BBMN23_1427
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
UvrD_C_2
AAA_30
DEAD
Motif
Other DBs
NCBI-ProteinID:
AJE06399
LinkDB
All DBs
Position
complement(1664228..1668277)
Genome browser
AA seq
1349 aa
AA seq
DB search
MGTAPAATPKFTDSPEQAAVIQAPSYEDVVVVAGAGSGKTYTMTRRIITLIDQGISPEKI
LGLTFTRKAASELLSRVSAAVTRNQAGRGTRVAFLKPEVSTYDAFFQTIVRQYGLLVGFD
QNTQPLSEAGALQLIHTVLDKHMDQLMAFDQGGDELGKFSTIAGNVFTLSNAIAGAMIGS
DCTSFDEAVERVRAWDKAFVAQVAKALEDEDVPDDEPKVGKAPKQKKKESDTAFEARKRE
YRAQCHQLCVHNTAKLAGTARKRDLLLDLVADYHAEKRALNMAEFSDFTIAAFQLVTRFP
SIGATYRKRYTHVLLDEYQDTSTTQAALLTALFHADSTHRSAVNAVGDPFQSIYAWRGAS
PGAFRMLQHDFGHDATDKPYTLTVTRRNSRMVLEAANNLTKPLRLPARRRGSSLMREVDV
PPLANIDNAPEGTLGVLGYATFGQEIDAIVRFAKQAIALHTPTENELADGAKDNRPHVAL
LFRSKTQMPAYEDALEQAGLTTLVVGQAALLERPEIKDILALLHVVCDHTDSAALMRLLA
TPRFGLSADDLQALAGIAERLNTAQRYRALVSAGIVEADANPSDADIRATVRAYRDQVPN
AVFLIDVLLRGDLRHLVDGVLSRTGAASVIHAGRVIQQVQRTAGHPLPEVVRTAITALGL
DIDLLLAERMRHPDAGNRVTSHAASSLDAMLSLVDTYLQEIAAQGTPSLRAFISWVDSLR
DASDDNATAPDTPVDVVLMTVHQSKGLEWDAVAVVGMRDGTFPSSQGDRLSVKTDEDHPG
GRRDGVWEPPEYFEKAHTWLEDPSAVPVPVRADADILPRFPHDAPIGGNPVESLDGLDDA
EVIDDEVFGTLRTMAVDDMEGMDPASLYLTQQEEYGRRLHADERRLAYVALTRARYEALL
VYSGCNETSRDSRLAEGKKSAAPSNFWLETRDSMNGIVTAVREPDNLSDDVDGSPHTLGL
DLPDGYFVGEHARDFENAVVGDAWNTPLEPVSDDHTLPWPCDLSADVADKLRAAAEQVRA
VESDEPNIAESTGTQGDVADESATPSPETGNSLLRLAKLLVADEHLMPEPDAADAGESQD
AFDEAVRAKGERILAAGRQNVTSLQARAGSMGERDSRAYWRGLVRPIPHVASPAAQLGTR
FHAWAERFIMADADVDGIGGTEGAAGMAAQSRAELIALIGDTQVDADNGGVQSQDAPSQD
AQLRDERKLAAWQRRLVASPWAKRRPAWAERQLVVDMPQLGTIVNGKLDAVFFGGLDETD
ETKRYTVVDWKTGVKPRKPDEIKEKLAQLDLYRLLLAAMEGVPLDAIDACLYYVSEPHEA
DRELDALDKTEEEILAELSYGIPQQSDND
NT seq
4050 nt
NT seq
+upstream
nt +downstream
nt
atgggcactgcgccggccgccacgccgaaattcaccgacagtccggaacaggccgccgtc
atccaagccccctcatacgaggacgtggtcgtggtggcgggcgccggctccggcaaaacc
tacaccatgacccgccgcatcatcaccctcatcgaccaaggcatcagtcccgagaagatt
ctgggcctgaccttcacacgcaaagccgcctccgaactgctttcgcgcgtttccgctgcc
gtgacgcgcaaccaggccggacgtggtacgcgcgtcgccttcctcaaaccggaagtctcc
acctatgacgcgttcttccaaaccatcgtgcgccaatacggcctgctcgtcggcttcgac
caaaacacgcagccattgagcgaagccggagcgctgcagctcatccacaccgtgctcgac
aagcacatggaccagctcatggccttcgaccaaggcggcgacgaactcggcaaattctcc
accatcgccggcaacgtgttcaccctatccaacgccatcgcaggagccatgatcggcagc
gactgcaccagcttcgacgaagccgtggaacgcgtgcgcgcatgggataaggcgttcgtg
gcgcaagtggccaaagcgcttgaagacgaggacgttcccgatgacgagccgaaagtgggc
aaggctccgaaacagaagaaaaaggaatccgacaccgccttcgaagcgcgcaaacgcgaa
taccgcgcccaatgccaccaactgtgcgtccacaacaccgcgaagttggccggcacggcc
cgcaaacgcgacctgctactcgacctcgtggccgactaccacgccgaaaaacgcgccctc
aacatggccgaattcagcgacttcaccatcgccgcattccaactcgtcacccgattcccc
tccatcggagccacctaccgcaaacgctacacgcacgtgctgcttgacgaataccaagac
acctccaccacgcaggcggccctcctgaccgcactgttccacgccgattccacccatcgc
agcgcggtgaacgccgtcggcgaccccttccaatcgatctacgcatggcgaggagccagc
ccaggcgcattccgcatgctgcaacacgacttcggccacgacgccaccgacaagccctac
acgctgaccgtcacccgacgtaactcgcgcatggtgctcgaagcggccaacaatctgacg
aaaccattgcgcctgcccgccagacgtcgcggcagctcgcttatgcgcgaagtggacgtg
cccccgctcgccaacatcgacaatgcccccgaaggtacgctcggcgtgctcggctacgcc
acattcggccaggaaatcgacgccatcgtacgcttcgccaaacaagcgatcgcactgcac
acgccaaccgaaaacgagctcgccgacggagccaaagacaaccgtccgcacgtggcgctc
ctgttccgctccaaaacgcagatgccagcctacgaggacgcactggaacaagccggcctc
accacactcgtcgtcggccaggccgcactcctggaacgtcccgaaatcaaagacatcctc
gccctgctgcacgtcgtatgcgaccacaccgacagcgccgcgctcatgcggctgctcgcc
acgccacgattcggtctgtccgccgacgatctgcaggcgctcgccggcatcgccgaacgg
ctcaacaccgcgcaacgctaccgcgcgctcgtgtcggccggcatcgtggaggcggatgcg
aatccgtccgacgccgacatccgcgccaccgtgcgcgcctaccgcgaccaagtgcccaac
gccgtcttcctgatcgacgtgctgctgcgcggcgatctgcggcacctcgtcgacggcgta
ttgagccgtacgggagccgcgagcgtcatccacgccggtcgcgtcatccaacaggtgcag
cgcacggccggccatccgttgccggaagtggtacgcacggccatcaccgcgctcggactg
gacatcgacctgctgctcgccgaacggatgcggcatccggatgccggcaatcgtgtcaca
tcgcatgccgcttcgtcactcgacgcgatgttgtctctggtggacacctacttgcaggaa
atcgccgcgcagggcacgccaagcctgcgcgcgttcatctcgtgggtggattcgctgcgt
gacgcgtccgacgacaacgccaccgcaccagatacccccgtcgatgtggtgctcatgacc
gtgcaccagtcgaaaggcctggaatgggacgccgtggccgtggtcggcatgcgcgacggc
accttcccgtccagtcaaggcgaccgcctgagcgtcaaaacggacgaagaccatccgggc
ggtcggcgcgacggcgtatgggagccgccggaatacttcgaaaaagcccacacttggctg
gaagacccgtccgcggtgccggttccggtgcgcgccgacgcggatatcctgccacgattc
ccgcacgacgcgcccatcgggggcaatcccgtggaatcgctcgacggattggacgatgcg
gaagtgatcgacgacgaggtgttcggcaccttgcgaaccatggccgtcgacgatatggaa
ggaatggatccggcaagcctgtacctgacgcaacaggaggaatacggccgccgactgcac
gccgacgaacgccgtctcgcctacgtggcgttgacgcgcgcccgctacgaggcgctgctc
gtatacagcggatgcaacgagacgagccgcgactcccgcctggcggagggaaagaaaagc
gccgcgccgtcgaatttctggctggagacgcgcgattcgatgaacggaatcgtcaccgcg
gtacgcgaaccggacaacctgtccgacgatgtggacggctccccgcacacgctgggactt
gacctgcccgacggctatttcgtaggcgaacacgcccgcgatttcgagaatgccgtggtg
ggcgatgcgtggaacacgccgctcgaaccggtctcggacgaccatactttgccttggccg
tgcgatctgagcgccgatgtcgccgacaagctgcgtgccgcggccgaacaggtacgtgcc
gtcgaatccgacgaaccgaatatcgctgaatccacgggaacgcagggcgacgttgccgat
gaatccgccacgccatcgccggaaaccggaaactcactgctgcgtctcgccaaactgctc
gtcgccgacgaacatctcatgccggaaccggacgcggctgacgcaggcgaatcgcaggac
gccttcgacgaggccgtgcgtgccaaaggcgaacgtatccttgctgccggccgccaaaac
gtcacctcgctgcaagcgcgcgccggctccatgggcgagcgtgactcccgcgcctactgg
cgtggtctggtccgtccgattccgcacgtcgcctcgccggcggcacagctcggcacgcgg
ttccacgcatgggctgagcgtttcatcatggcggatgcggacgtcgacggcatcggcggt
acggaaggtgctgccggcatggccgcgcagtcgcgtgcggaactgatcgcattgataggt
gatacgcaagtcgacgcggacaacggcggcgtgcaatcgcaggacgcaccatcgcaggac
gcccaattgcgagacgaacggaaactggccgcttggcagcgtcgtctcgtcgcctcgccg
tgggcaaaacgacgtccagcatgggcggaacgccagctcgtcgtcgacatgccccagctc
ggcaccatcgtcaacggcaaactcgacgcggtgttcttcggcggtctcgacgaaacggac
gagacgaaacgctacaccgtggtcgattggaaaaccggcgtaaaaccacgcaaaccggac
gaaatcaaggagaagctcgcacagctcgacctgtaccgcctgctgctcgcggcgatggaa
ggggttccgttggatgcaatcgacgcctgtctctactatgtgagtgagcctcacgaggcc
gatcgggagcttgacgccctcgacaaaacagaagaagagatccttgccgagttgagctac
ggaattccgcagcaatccgacaacgactag
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