Bacillus atrophaeus: BATR1942_05030
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Entry
BATR1942_05030 CDS
T01339
Name
(GenBank) YkqC
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
bae
Bacillus atrophaeus
Pathway
bae03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bae00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BATR1942_05030
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bae03019
]
BATR1942_05030
Messenger RNA biogenesis [BR:
bae03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BATR1942_05030
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
DUF5548
DUF4453
Motif
Other DBs
NCBI-ProteinID:
ADP31960
UniProt:
A0ABM5LVU7
LinkDB
All DBs
Position
complement(979783..981450)
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AA seq
555 aa
AA seq
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MKFVKNDQAAVFALGGLGEIGKNTYGVQFQDEIVLIDAGIKFPEDELLGIDYVIPDYTYL
VKNEDKIKGLFITHGHEDHIGGIPYLLRQVNIPVYGGKLAIGLLRNKLEEHGLLRQTKLN
IIGEDDIIKFRKTAVSFFRTTHSIPDSYGVVVKTPPGNIVHTGDFKFDFTPVGEPADLTK
MAEIGKEGVLCLLSDSTNSEVPDFTMSERRVGESIHDIFRKVDGRIIFATFASNIHRLQQ
VIEAAVLNGRKVAVFGRSMESAIEIGQNLGYINCPKNTFIEHNEINRIPANKVTILCTGS
QGEPMAALSRIANGTHRQISINPGDTVVFSSSPIPGNTISVSRTINQLYRAGAEVIHGSL
SDIHTSGHGGQEEQKLMLRLMKPKFFMPIHGEYRMQKMHIKLATDCGIPEENCFIMDNGE
VLALKGNEASVAGKIPSGSVYIDGSGIGDIGNIVLRDRRILSEEGLVIVVVSMDMNEFKI
SAGPDLISRGFVYMRESGDLIHDAQELISNHLETVMERKTTQWSEIKNEITDTLAPFLYE
KTKRRPMILPIIMEV
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttgtaaaaaatgatcaggctgctgttttcgccctcggaggtttgggtgaaatc
ggcaaaaatacgtacggagtgcagtttcaagacgagattgttctgattgatgcgggaatt
aagtttccggaagatgagcttctcggcattgactatgtcattcccgattacacgtattta
gttaagaacgaagataaaattaaaggtttgtttattacacacggacatgaagaccacatt
ggcggcattccgtatctgctcagacaagttaatattcccgtttacggcggtaaactcgcg
atcggcttacttcggaataaacttgaagagcatggtttattaagacaaacgaaactcaat
attatcggtgaagacgatattattaaattcagaaaaacagctgtatccttcttcagaacc
actcacagtattccggattcctacggggttgttgtgaaaacaccgcccggaaacatcgta
catactggagacttcaagttcgactttactccagtcggtgaaccggcggacttgacaaag
atggctgagatcggaaaagaaggcgtgttatgcctcttatcagacagcacaaacagtgaa
gtacccgatttcactatgtctgaacgccgtgtcggtgagagcattcacgatattttccga
aaagtggacggaagaattatctttgcaacctttgcttcgaacattcaccgtttgcagcag
gtaatagaagctgccgtgttaaacggcagaaaagtcgccgtatttggacgcagtatggaa
tcggcaattgaaataggccaaaatctcgggtatattaattgtcctaaaaatacatttatc
gagcacaatgaaattaatcggatccctgcaaacaaagtaacgattttatgtacgggaagc
cagggagagccgatggccgcattgtcacggattgcaaacggcactcaccgtcaaatctca
attaatccgggagatacggtagtcttttcttcatctcctataccggggaacacaatcagc
gtaagccgtacaatcaaccaattgtaccgtgccggtgccgaggttattcacggatcgctt
agtgatatccatacatccggacacggcggacaggaagaacaaaagctgatgctccgcttg
atgaagcctaaattctttatgccgattcacggggaatacagaatgcaaaaaatgcatatc
aagcttgcgacagattgcggcataccagaagaaaactgctttatcatggataatggcgag
gttttagcgcttaaaggaaatgaagcttctgtagcgggcaaaattccatccggttcagtg
tatattgacggaagcggaattggcgatatcggcaacattgtacttcgcgaccgcagaatt
ctgtccgaagaaggacttgtcattgtagttgtcagcatggatatgaatgaatttaaaatc
tcagcaggtcctgacttgatttcaagaggattcgtttatatgagagaatccggtgatctg
atccatgacgcacaagagctgatttcaaaccatttagaaacggttatggaaagaaaaaca
actcaatggtctgaaattaaaaacgaaataacagacacgcttgctcctttcctatacgaa
aagacaaaacgccgtccgatgatccttccgattattatggaagtataa
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