Bacillus atrophaeus: BATR1942_14770
Help
Entry
BATR1942_14770 CDS
T01339
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
bae
Bacillus atrophaeus
Pathway
bae03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bae00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BATR1942_14770
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bae03019
]
BATR1942_14770
03016 Transfer RNA biogenesis [BR:
bae03016
]
BATR1942_14770
Enzymes [BR:
bae01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
BATR1942_14770
Messenger RNA biogenesis [BR:
bae03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BATR1942_14770
Transfer RNA biogenesis [BR:
bae03016
]
Prokaryotic type
tRNA degradation factors
BATR1942_14770
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
S1CSD-TOTE-2
S1_RRP5
OB_RNR_1st
TFIIE_beta
OB_Dis3
MarR_2
Rep3_N
Motif
Other DBs
NCBI-ProteinID:
ADP33876
UniProt:
A0ABM5M0Y5
LinkDB
All DBs
Position
complement(2891960..2894299)
Genome browser
AA seq
779 aa
AA seq
DB search
MEKEAFMDKLLSFMKEEAYKPLTVQELEEMMNITDADEYKELVKALVALEEKGLVVRTRS
DRYGLPEKMNLIKGKLSAHAKGFGFLLPEDTSLSDVFIPPTELNTAMNGDIVMVRLNSQS
SGSRQEGTVIRILERSIQRVVGTYTETKSFGFVIPDDKKITSDIFIPKHANHGAVEGHKV
VVTLTSYPEGRMSAEGEVTEILGHKNDPGIDILSIIHKHGLPGEFPGEAMEQANNTPDTI
DEKDLKDRRDLRDQIIVTIDGADAKDLDDAVTVTKLENGNYKLGVHIADVSHYVTENSPI
DKEALERGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMTINKQGQVVEHEIFQ
SVIKTTERMTYSDVKKILVDDDEELKTKYEQLVPMFKDMEKLAEILRGKRMERGAVDFDF
KEAKVLVDEDGAAKDVVIRERSVAEKLIEEFMLVANETVAEHFHWMNVPFIYRIHEEPNA
EKLQKFLEFVTTFGYVVKGTAGNIHPRALQSILDAVRDRPEETVVSTVMLRSMKQAKYDP
ESLGHFGLSTEFYTHFTSPIRRYPDLIVHRLIRTYLINGKVDEATREKWAERLPEIADHT
STMERRAVDAERETDDLKKAEFMLDKIGEEFDGMISSVTNFGMFVELPNTIEGLIHVSFM
TDDYYRFDEQHFAMIGERTGNVYRIGDEITVKVVDVNKEERNIDFEIVGMKGTPRRPKDT
DNRKKRGKPARKRVLNTNTPVSPPASEEKGEWFTKPKPKKKKKKRGLQNTPKQKRKKKK
NT seq
2340 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaagaagcatttatggataaacttctctccttcatgaaggaagaggcatataag
ccgcttaccgttcaagaattggaagagatgatgaatattacggatgccgatgagtataaa
gagctggtaaaagctttggtcgcgcttgaggaaaaagggcttgtcgtaaggacaagaagc
gaccgctacggtcttccggaaaaaatgaatttaataaaaggaaagctttcagcgcatgcg
aaagggttcggctttttgctgccggaggatacatctttaagtgatgtgtttataccgccg
actgaactgaacacagcgatgaacggcgatattgtcatggtccgtctcaattcgcaatca
agcggttcaaggcaagaaggaaccgtcatccgtattttggagcggagcattcagcgggtc
gtcggaacctacacagaaacaaagagcttcggctttgtcattccggacgataaaaaaatc
acaagtgacatttttattcccaagcatgccaatcatggagcggtggaaggacataaagtg
gttgtcacactgacgagctatcctgaagggcggatgagcgctgaaggagaagtcacagaa
atcctcggccacaaaaatgatccgggcattgatattctgtctattatccataagcacggc
ctgccgggcgaattcccgggagaagcgatggagcaggcaaacaatacgcctgatacaatt
gatgaaaaggatctgaaggaccgccgcgacctgcgcgatcaaatcattgtcaccattgac
ggcgcggatgcgaaggatttagatgacgccgtgacagtgactaagcttgagaacggtaac
tataagcttggtgtccacattgctgacgtcagccattatgtgacggagaactctccgata
gataaagaggcgctggaaagaggaacgagcgtttacttagtggaccgggtgattccgatg
attccgcacagattgtcaaacggcatctgctcattaaatccgaaggtggaccgcctgaca
ctatcctgtgaaatgacaatcaacaagcagggacaagtcgtcgagcacgagatcttccag
agtgtcatcaaaacgacagagagaatgacatattcagatgtgaagaagatccttgttgat
gacgatgaagagctgaaaaccaaatatgagcagcttgttcctatgtttaaagacatggaa
aaactcgccgaaattcttcgcggcaagcgaatggagcgcggagctgtagattttgatttt
aaagaagccaaggtgctggttgatgaagacggagctgcaaaagatgtcgtgatcagagag
cggtcggttgctgaaaaattgatcgaagaatttatgctggttgcgaatgaaacggtcgcc
gagcattttcattggatgaacgttccgtttatttaccggatccacgaagagccgaatgct
gaaaaactgcaaaagtttttggaatttgtcactacattcggttatgttgtgaaaggaacg
gcgggcaatatccatccgcgggcgctgcaaagcattcttgacgcagttcgtgacagacct
gaagaaaccgttgtatcaactgttatgcttcgttcgatgaagcaggcgaaatatgatccg
gaaagccttgggcacttcgggctgtctacggaattctacactcatttcacctcgccgatc
cgccgctatccggatttgatcgtgcatagattgatcagaacgtatttgatcaatggaaaa
gtcgatgaagcaacgagagaaaaatgggctgagcgcctgccggaaatcgccgaccatacg
tcgacaatggaacgcagagctgtggatgcagaacgtgaaacagatgatctgaaaaaagcg
gaatttatgcttgataagatcggtgaagaatttgacgggatgatcagctccgtaaccaat
ttcggaatgttcgtcgagcttccgaatacaattgaagggctcattcatgtcagctttatg
acggacgattactatcgttttgatgaacagcattttgccatgatcggcgaacggacgggt
aatgtctaccgcatcggcgacgagattacagtaaaggttgtcgatgtcaataaagaagag
cggaatatcgactttgaaatcgtcggtatgaagggaacgccgcgccgtccgaaagatacg
gataaccggaaaaaacgcggaaaaccggccagaaagcgcgtactaaacaccaatacacct
gtatctccgcccgcatcggaggaaaaaggggaatggtttacaaagccaaagccgaaaaag
aaaaagaaaaaacgaggcttgcaaaacacgcctaagcaaaaacgcaaaaagaagaaataa
DBGET
integrated database retrieval system
