Bacillus aerius: RE735_00155
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Entry
RE735_00155 CDS
T09365
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
baei
Bacillus aerius
Pathway
baei03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
baei00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RE735_00155 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
baei03400
]
RE735_00155 (mfd)
Enzymes [BR:
baei01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RE735_00155 (mfd)
DNA repair and recombination proteins [BR:
baei03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
RE735_00155 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
Cas3-like_C_2
UB2H
RecG_dom3_C
CdvA
Motif
Other DBs
NCBI-ProteinID:
WMT29051
LinkDB
All DBs
Position
complement(28323..31856)
Genome browser
AA seq
1177 aa
AA seq
DB search
MKNIQSFIKQSDDFQSIFNGLKEGLKEQLLAGLSGSVRSLFTAAISDELERPMFIVTHNL
YQAQKVTDDLASVMPDRSVLLYPVNELIASEIAVASPELRAQRLDVLNRLANGENPIVVT
PAAAVRRMLPPVELWKESQIHLKVGEEIDLEAFSKQLVQIGYDRTSMVAAPGDFSVRGGI
IDIYALTEDHPIRIELFDTEVDSIRTFHSDTQRSLETLQEIKIGPAKELIVRGPERVRAI
EQLDEGLASSLKKFNSDKQKELLHQNISADREKLLEGIVTQEMTKYLSYFYEKPASLLDY
TSQDTIIILDEISRIQEMEEQLEQEEADWTISLLEEGNILHDLALSFPFQELFNQQSRSI
LYYSLFLRHVQQTNPQNIVNVSSKQMQNFHGQMNVLASEIERYKKQNYTVVFLGADEERT
EKLSSVLHDYDIEAAFAKPDAELVSGQVYILQGELQTGLELPLSKIAVITEGELFKKRVK
KQARKQKLTNAERIKSYSELQVGDYVVHINHGIGKYLGIETLEIGGIHKDYLNIHYQGSD
KLYVPVEQIDQVQKYVGSEGKEPKLYKLGGSDWKRVKKKVESSVQDIADDLIKLYAEREA
SKGYAFSPDHEMQRQFESAFPYQETDDQIRSIHEIKQDMERERPMDRLLCGDVGYGKTEV
AIRAAFKAIADGKQVALLVPTTILAQQHFDTIMDRFQDYPVKIAQLSRFRTRKETTETLK
GLKNGTIDMVIGTHRLLSKDIVYKDLGLLIIDEEQRFGVTHKEKIKQMKANIDVLTLTAT
PIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNGALVREAIERELARGGQVYFLYN
RVEDIERKADEISMLVPDAKVSYAHGKMSENELESVMINFLEGESDVLVSTTIIETGVDI
PNVNTLIVHDADKMGLSQLYQLRGRVGRSNRVAYAYFTYRKDKVLSEVAEKRLQAIKEFT
ELGSGFKIAMRDLTIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEERRGDTTAQEKFE
PEIDLQIDAYIPDSYISDGKQKIEMYKQFRAIGSIEERKELQDEMIDRFGEYPQEVADLF
TIATMKVYAVQERVELIKMEKGIARLTLDEKASSDIDGQKLFELGSQYGRDIGLGMEGSK
LIISVQTKGKKTEEWLEVVLRMLRGLQDVKKETIPSS
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaacatacaatcatttatcaaacaaagtgatgattttcagtctatttttaacgga
ctaaaagaagggttaaaagaacagctgctcgccggactatcaggctccgtcagatcttta
tttacagccgccatatcagacgaattagagcgtccgatgtttattgtgacacacaactta
tatcaagcgcagaaggtgacagatgatctagcgagtgtgatgccagatcgctcggtcctt
ctttatcctgtcaatgaactcattgcatcggagatagctgtagcaagtcctgagcttaga
gcgcagcgtcttgatgtactaaatcgtctcgcaaatggagaaaatccgattgtcgtaacc
ccggcagctgcggtgcgaagaatgcttccgcctgttgagctctggaaggagagtcagatc
catttaaaggttggtgaagaaattgatttggaggcgttttcaaaacaactcgtgcaaatc
ggttatgaccggacgtctatggttgctgcgcccggagactttagtgtgcgcggagggatc
atcgacatttatgcgctaacagaagatcatccgattcgtattgagctgtttgatacagag
gtggactccattcggaccttccactctgacacgcagcgttcactggaaacacttcaagaa
atcaagattggcccggcgaaagagctgattgtaagaggacctgaacgagtgagagcgatt
gaacagcttgacgaaggtcttgccagcagcttaaagaaattcaactcggataaacaaaaa
gaactgctccatcagaatatttctgctgatcgtgagaagctgctagaaggtattgtgaca
caagaaatgacgaagtatctgtcctatttctatgaaaagcctgctagtttgctagattat
acatcgcaggatacgattatcattctagatgaaatcagcagaattcaggagatggaagaa
cagcttgaacaggaagaagcagattggacaattagtctgctggaagaagggaatatcctg
catgatctagccctttccttcccatttcaagagctgttcaatcagcaatcgagatcgatt
ctgtactattctttatttttgagacatgttcagcagaccaatccgcaaaatatcgtcaat
gtatctagtaagcaaatgcagaatttccatgggcagatgaatgtgcttgcaagtgaaatt
gaacgctacaaaaagcagaattatacggttgtctttttaggtgcggatgaagagcggaca
gagaagttgtcatctgttttacatgattatgatattgaagctgcgtttgctaaaccggac
gctgagctggtcagcggccaagtatatattttacaaggtgagctgcaaacggggcttgaa
ctgcctttgtctaaaattgcagtgatcacagaaggcgagcttttcaagaaacgtgtgaag
aagcaggcacgtaagcaaaagctgacgaacgcagagcgaatcaaaagctactcagagctg
caagtgggcgattatgtggtgcacattaaccacgggatcggtaagtatttaggaattgaa
acgcttgaaattggcggcattcataaagattatttaaatattcattaccaaggaagcgac
aagctttatgtccctgttgaacaaattgatcaagtgcagaagtatgtagggtcagaagga
aaagaaccaaagctatacaaactaggcggcagcgactggaaacgcgtgaagaaaaaagta
gaatcatctgtgcaggacattgcagatgatctgattaagctgtacgcagaacgtgaagca
agcaaagggtatgccttttcgcctgaccatgagatgcagcgccagtttgaatctgcattc
ccttaccaagaaacagacgatcaaattcgctcgattcatgaaatcaagcaagacatggag
cgggagcgcccgatggatcgtctgctttgtggagatgtgggctatggaaaaacagaggtg
gcgattcgagcggccttcaaagccattgctgacgggaagcaggtggcactgcttgtacca
acaacgatcttagcgcagcagcattttgacacgattatggacagattccaagactatcct
gttaaaatcgctcagcttagccgcttccgtacacgaaaagaaacaacagaaaccttaaaa
gggctgaaaaatggaacgattgatatggtcatcgggacgcatcgtcttctttcaaaagac
attgtgtacaaggatttaggactgttaattattgatgaagagcagcgcttcggtgtgacg
cataaagagaaaattaagcaaatgaaagccaatattgatgtgctgacgttaacggcaacg
ccaattcctcgtacgcttcatatgtccatgcttggcgtacgtgacttatctgttattgaa
acaccacctgagaaccgtttcccagttcaaacctatgttgtcgagtacaatggtgcgtta
gttagagaagccattgagcgagaactggcaagaggcggtcaagtgtacttcctttataac
cgagtggaggatattgaacgaaaagcagatgaaatctcgatgcttgttccagacgcaaaa
gtaagctacgcacatgggaaaatgagtgagaacgagctggaatccgtgatgattaatttc
ctagaaggtgaatcggatgtactcgttagtacaaccattatcgaaacgggcgtagacatt
ccaaatgtgaacacgcttattgttcacgatgctgataaaatggggctttcgcagctgtac
cagttaagaggacgagttgggcgctcgaatcgtgtggcctatgcttatttcacttatcga
aaagataaagtactttctgaagtagctgagaaaagacttcaagctattaaagaattcact
gagcttgggtcaggctttaagattgcgatgcgtgatttaacgattcgaggagcaggaaat
ttacttggtgcacagcagcatggatttattgattctgttggattcgacctttactctcaa
atgctgaaagaagccattgaagaaagaagaggcgatacgactgctcaagaaaaatttgag
ccggaaattgatctccaaattgatgcctacattccagatagctatatttctgatggcaaa
caaaagatcgagatgtataaacagtttagagcgattggatcaatagaagagcggaaagag
ctgcaagatgaaatgattgaccgattcggagaatatccgcaagaagtggctgatttgttc
acgattgcgacgatgaaggtgtacgctgtgcaggaacgtgtcgagttgatcaagatggag
aaaggcattgccagactcactctcgatgaaaaagcaagcagcgacatcgatggtcaaaaa
ttatttgagcttggcagtcaatatggacgggatatcggtcttggcatggaaggcagcaag
ctgattatttctgtccaaacaaaaggcaagaaaacggaggaatggcttgaagtggttctt
cgtatgcttcggggtcttcaagatgtgaaaaaagaaaccattccatcttcataa
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integrated database retrieval system
