Burkholderia aenigmatica: L3V59_05530
Help
Entry
L3V59_05530 CDS
T09543
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
baen
Burkholderia aenigmatica
Pathway
baen03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
baen00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
L3V59_05530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
baen03019
]
L3V59_05530
03009 Ribosome biogenesis [BR:
baen03009
]
L3V59_05530
Enzymes [BR:
baen01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
L3V59_05530
Messenger RNA biogenesis [BR:
baen03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
L3V59_05530
Ribosome biogenesis [BR:
baen03009
]
Prokaryotic type
rRNA processing factors
L3V59_05530
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
UKD12520
LinkDB
All DBs
Position
1:complement(1147569..1150760)
Genome browser
AA seq
1063 aa
AA seq
DB search
MKRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNY
GEDRHGFLPFKEVARQYFKEGIDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRIEGDERQELRETMAQLQIPDGMSMIARTAGIGRSAEELQ
WDLNYLLQLWRAIEAASQSGNPGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTNEIHDQ
ARAFMDIVMPDNVAKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALV
AIDVNSARATKGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVE
QRLKDALKHDRARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSA
LQVLRIIQEEAMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRFKVGIVLIPNKHLDT
PHYKLERLRHDDARLDDPRASWKMAEEAARELESETGYSKRAAEVKPKQEAAVKGITPER
PAPSPAPQRPVEPVAAPAPAPVAPASGGFFGWLKSLFGVSPAPAPAPVAPAPVKEQAARP
ARGERAEKSEQRGERGGDRNRNRRSGAQQAQGGRDQAAAGRGQPQRQEREGKEAREPREA
REPRENREPREGREPREGRENREGREGREGREGRAPREGREPRESREPREPRENREPRER
TEQPEGVEAAGRGERQERGERRERGERRERGERRKPTQHAATLETVTRGETHPESETDEA
FAEALPGAELAADAEAVARDGEERRRRRRGRRGGRREREEDGAVVDHAEQGAEGEATVQA
VTPEAPAAAEPAHTAAPAVVVAAAAASAVVAEAVVEHHAEPAAPAAVEPQPAPVHVEAAP
AEAAVVAQAAEPAPVAPAVDTEAGPAPVAVSPTDAFEVPAAPAAVEAPQPAPVEQAAPAV
TTEAAPVAAELAHVEAAPVEAVAAPAPAPAPAPAQPAAAPASASLDVVLEQAGLVWVNTD
AGKFAAAQEAASHLPRPARVPRERKTLPPADTAPMQQVETTHH
NT seq
3192 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgctgttcaatgcgacgcagcaggaggagctgcgcgtcgccatcgtcgac
gggcaaaagctcatcgacatcgacatcgagacagccgggcgcgaacagcgcaaaggcaat
atctacaaaggtgtcatcacccgcatcgagccgtcgctcgaagcgtgcttcgtcaattac
ggcgaagaccgccacggcttcctgccgttcaaggaagtcgcccgccagtacttcaaggaa
ggcatcgacatgcgctccgcgcgcatccaggatgccctgcgcgaaggccaggagctgatc
gtccaggtcgagaaggaagagcgcggcaacaagggcgcggccctcaccacgttcatctcg
ctcgccggtcgttacctggtgctgatgccgaacaacccgcgcggcggcggcgtgtcgcgc
cggatcgagggcgacgagcgtcaggaactgcgcgagacgatggcgcaactgcagatcccg
gacggcatgagcatgatcgcccgtaccgcgggcatcggccgcagcgccgaggaactgcag
tgggacctgaactacctgctgcaactgtggcgcgcgatcgaagcggcgtcgcaaagcggc
aaccccggccagccgatgctgatctatctggaatcgagcctcgtgatccgcgcgatccgg
gactatttccagccggatatcggcgaaatcctgatcgatacgaacgagatccacgatcag
gcccgtgcattcatggacatcgtgatgccggacaacgtcgcgaaggtgaagcgctaccac
gacgacgtgccgctcttctcccgcttccagatcgaacaccagatcgagaccgcgtactcg
cgcacggtgccgctgccgtcgggcggcgcgatcgtgatcgaccacaccgaagcgctcgtc
gcgatcgacgtgaactcggctcgcgcgaccaagggcgcggacatcgaggaaacggccacc
cgcacgaacctcgaagcggccgacgaagtcgcccgccagctccgcctgcgcgacctcggt
ggcctgatcgtgatcgatttcatcgacatggaatcggccaagagccagcgcgaagtcgag
caacgcctgaaggacgcgctcaagcacgaccgtgcgcgcgtgcagatgggcaagatctcc
cgcttcggcctgatggaactgtcgcgccagcgcctgcgcccggctttgtcggaaggcagc
cacgtgacgtgcccgcgctgtaacggcacgggccacatccgcgacaccgaatcgtccgcg
ctgcaagtgctgcggatcattcaggaagaagcgatgaaggaaaacaccgcggcgatccac
tgccaggtgccggtcgaagtgaccgccttcctgctcaacgaaaagcgtcaggaaatcaac
aagatcgagtcgcgcttcaaggtcggcatcgtgctgatcccgaacaagcacctcgatacg
ccgcactacaagctcgagcgcctgcgccacgacgacgcacgtctcgacgatccgcgcgca
tcctggaagatggccgaggaagccgcccgcgaactcgagtcggaaaccggctacagcaag
cgcgcggcggaagtgaagccgaagcaggaagccgcggtcaagggcatcacgcccgagcgt
ccggccccgagcccggccccgcagcgtccggtcgaacccgttgccgcacccgcgcccgcg
cctgtcgcaccggcaagcggtggcttcttcggctggctgaagagcctgttcggcgtgtcg
ccggcgccggcgcccgcaccggttgctccggcaccggtcaaggagcaggcagcccgtccg
gctcgcggcgaacgcgccgagaagtccgagcaacgcggcgaacgcggtggcgatcgcaac
cgcaaccgtcgcagcggtgcccagcaggcgcaaggcggccgagaccaggctgcagcaggt
cgcggccagccgcaacgccaggaacgcgaaggcaaggaagcacgcgaaccgcgtgaagca
cgtgagccgcgcgaaaaccgcgagccgcgcgagggtcgtgaaccgcgtgaaggtcgcgag
aaccgcgaaggccgtgagggtcgcgaaggtcgcgagggccgtgccccgcgtgaaggtcgc
gagccgcgtgaaagccgtgagccgcgtgaaccgcgtgaaaaccgcgaaccgcgcgagcgt
accgagcagccggaaggcgtcgaagcagccggtcgtggcgagcgccaggagcgcggcgaa
cgtcgcgagcgcggcgaacgtcgcgagcgcggcgagcgtcgcaagccgacccagcatgcg
gctacgctcgaaaccgtcacccgtggcgaaacgcatccggaatcggaaaccgacgaggcc
ttcgcagaagcactgcccggcgccgagctggcagccgacgcggaagccgtcgcgcgtgat
ggcgaggaacgccgccgtcgccgtcgcggccgccgtggcggtcgtcgcgagcgcgaggaa
gacggcgcagtcgtcgaccacgccgagcaaggcgcagagggcgaagccaccgtgcaagcg
gtgacgccggaagcaccggctgctgccgaaccggcccacacggccgcaccggcagtcgtc
gtggcagccgccgcggcaagcgccgtcgtcgccgaagccgtggtcgagcaccatgccgaa
ccggcagcaccggccgctgtcgagccgcagccggcaccggtacacgtcgaagcagcgccg
gccgaagcagccgttgtcgcccaagcagcagaaccggcaccggtcgcaccggccgtcgat
acggaagccggtccggctccggtcgcggtttcgccgaccgacgcgttcgaagtgccggca
gcgcctgccgctgtcgaggcgccgcagccggcgcccgtcgagcaagccgcaccggccgtg
acgaccgaagccgctccggtggctgccgagctggcccatgtcgaagcagcgccggtcgaa
gccgtcgccgcaccggcaccggcaccggctccggctcctgcacaaccggcagccgcgccc
gcttcggcgagcctggatgtcgtgctggagcaggccggtctcgtctgggtgaacacggac
gccggcaagttcgccgctgcacaggaagccgcgtcgcacctcccgcgtccggcgcgcgtg
ccgcgcgaacgcaagacgctgccgccggccgatacggccccgatgcagcaggtcgaaacg
acgcatcactga
DBGET
integrated database retrieval system
