Burkholderia aenigmatica: L3V59_08440
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Entry
L3V59_08440 CDS
T09543
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
baen
Burkholderia aenigmatica
Pathway
baen03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
baen00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
L3V59_08440 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
baen03019
]
L3V59_08440 (rnr)
03016 Transfer RNA biogenesis [BR:
baen03016
]
L3V59_08440 (rnr)
Enzymes [BR:
baen01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
L3V59_08440 (rnr)
Messenger RNA biogenesis [BR:
baen03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
L3V59_08440 (rnr)
Transfer RNA biogenesis [BR:
baen03016
]
Prokaryotic type
tRNA degradation factors
L3V59_08440 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
OB_RNR_1st
RNase_II_C_S1
WHD_RNase_R
CSD
Motif
Other DBs
NCBI-ProteinID:
UKD13062
LinkDB
All DBs
Position
1:1788756..1791236
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AA seq
826 aa
AA seq
DB search
MSKYPYPIPSREEILGVLRTSDAPLAANDIAESLSIKRQEREGFFRRVAAMERDGQIRLD
KRGHYQLTHPSNFVAGRVQGHRDGYGFVIRDDGQDDLFLPNGEMQKVMHNDRVLARIVGY
DRRGRPEGHVVEVTERANKRVIGRLLNENGALIVAPEDKRIGHDILITQNVKKAKVGQVV
VVELTDFPSRHSQPLGRVVEVLGDIDDPGMEIEIAVRKYGVPHEFSQPALDEAAALPDKV
RPTDLRFRVDLRDVPLVTIDGEDARDFDDAVYCEPVKVGRGDGYRLIVAIADVSHYVQPG
SGLDADALERSTSVYFPRRVIPMLPEKLSNGLCSLNPQVDRCVLACDMVITARGEIKAYQ
FYPAVIHSAARLTYTEVAAVLSNTKGPEAARRADLLPHLQDLYGVYKSLFAARQKRGAID
FDTTETYIVCNSQGKIEQIVPRQRNDAHKLIEECMLAANVCAADFLKRNKHPGLYRVHAG
PTPEKLENLRAFLRGMGLSLGGGDKPHASDYAALMAQIRDRPDAQMLQPMLLRSMQQAVY
SPDNIGHFGLAYEAYAHFTSPIRRYPDLLTHRAIYAILSGKKYVPKAPDGFELNTALSPR
ARAMQQADDETRGRARPNTAIWEELGLHCSANERRADEASRDVEAWLKCYFMRDKLGEEY
GGMVNGVTSFGIFVQLDTLFIEGLVHVTELGSDYFQYDEIKNELRGERTGIRYRLSDRVR
VQVSRVDLDARKIDFRLVRDTPVKAPRPSPAPASAGGGVDRGNGPRVRSLPQAEEPAPRR
KKAASAPSATVNEARAARAAAKKKGGSGGGVAAKPTAKKTRARKKY
NT seq
2481 nt
NT seq
+upstream
nt +downstream
nt
ttgagcaaatatccgtaccccattccgagccgtgaagaaattctcggcgtgctgcgtacg
agcgacgcgccgctggctgccaacgacatcgcagaatcactgtcgatcaagcgtcaggag
cgcgaggggttcttccggcgtgtcgccgcgatggagcgcgacggccagatccgcctcgac
aagcgtggccactaccagttgactcatccgtcgaacttcgtcgccgggcgcgtgcagggg
catcgtgacggctacgggttcgtgatccgtgacgacggccaggacgacctgttcctgccg
aacggcgaaatgcagaaggtgatgcacaacgatcgcgtgctcgcgcggatcgtcggctac
gatcgccgcggccgcccggaagggcacgtcgtcgaagtcaccgagcgcgcgaacaagcgc
gtgatcggccgcctgctcaacgagaacggcgcgctgatcgtcgcaccggaagacaagcgc
atcggccacgacatcctgatcacgcagaacgtgaagaaggcgaaggtcgggcaggtcgtc
gtcgtcgagctgaccgatttccctagccgtcattcgcagccgctcggccgtgtcgtcgag
gtgctcggcgatatcgacgatccgggcatggaaatcgaaatcgcggtgcgcaagtacggc
gtgccgcacgaattcagccagccggcgctcgacgaagccgccgcgctgcccgacaaggtg
cggccgaccgacctgcgtttccgcgtcgacctgcgcgacgtgccgctcgtgacgatcgac
ggcgaggacgcgcgcgacttcgacgacgccgtctactgcgagccggtcaaggtcggccgt
ggcgacggctaccggctgatcgtcgcgatcgccgacgtgtcgcattacgtacagccgggc
agcgggctcgatgccgatgcgctcgagcgcagcacgtcggtgtatttcccgcgccgcgtg
attccgatgctgccggagaagctgtcgaacggcctgtgctcgctgaacccgcaggtcgac
cgctgcgtgctcgcgtgcgacatggtgatcaccgcgcgcggcgagatcaaggcgtaccag
ttctacccggccgtcatccattcggctgcgcgcctgacgtacaccgaagtcgcggcggtg
ctgtcgaacacgaaggggccggaggccgcgcgccgtgcggatctgctgccgcacctgcag
gatctgtacggcgtctacaagtcgctgttcgccgcacggcagaagcgtggcgcgatcgac
ttcgacacgaccgagacctacatcgtctgcaactcgcagggcaagatcgagcagatcgtg
ccgcgccagcgtaacgacgcgcacaagctgatcgaggaatgcatgctggccgcgaacgtc
tgtgcggccgatttcctgaagcgcaacaagcatccgggcctgtaccgcgtgcacgcgggg
ccgacgccggagaagctcgagaacctgcgcgcgttcctgcgcggcatgggcctgtcgctc
ggcggcggcgacaagccgcatgcgagcgactacgcggcgctgatggcgcagatccgcgac
cggcccgatgcgcagatgctgcagccgatgctgttgcgctcgatgcagcaggccgtctac
agcccggacaacatcggtcacttcggccttgcctacgaggcgtacgcgcacttcacgagc
ccgatccgccgttatccggacctgctcacgcaccgcgcgatctacgcgatcctgtccggc
aagaaatacgtgccgaaggcgccggacggtttcgagctgaacaccgcgctgtcgccgcgc
gctcgcgcgatgcagcaggccgacgacgaaacgcgcggccgcgcgcgcccgaacacggcg
atctgggaagagctcggcctgcactgttcggcgaacgagcgccgtgcggacgaagcgtcg
cgcgacgtcgaagcctggctcaagtgctacttcatgcgcgacaagctcggcgaggagtac
ggcgggatggtcaacggcgtcacgtcgttcggcatcttcgtgcagctcgacacgctcttc
atcgaagggctcgtgcacgtcacggaactcggctcggactacttccagtacgacgagatc
aagaacgagctgcgcggcgaacgcacgggcatccgctatcgcctgtcggatcgcgtgcgc
gtgcaggtgagccgcgtcgatctcgacgcgcgcaagatcgacttccgcctcgtgcgcgat
acgccggtgaaggcgccgcgtccgtcgcccgcgccggcttccgctggcggcggtgtcgac
cgcggaaatggcccgcgcgtacgttcgctgccgcaggcggaggagcccgcgccgcgtcgc
aagaaggccgcgagcgcgccgagcgccacggtgaacgaagcgcgcgccgcgcgtgccgcc
gcgaagaagaagggcggcagcggtggcggtgtggcggcgaagccgaccgcgaagaagact
cgtgcccgcaagaagtattga
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