Bacillus aerophilus: BAE_07880
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Entry
BAE_07880 CDS
T08735
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
baer
Bacillus aerophilus
Pathway
baer03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
baer00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BAE_07880 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
baer03400
]
BAE_07880 (mfd)
Enzymes [BR:
baer01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BAE_07880 (mfd)
DNA repair and recombination proteins [BR:
baer03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BAE_07880 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
Cas3-like_C_2
UB2H
RecG_dom3_C
CdvA
Motif
Other DBs
NCBI-ProteinID:
QAR52731
LinkDB
All DBs
Position
1509908..1513441
Genome browser
AA seq
1177 aa
AA seq
DB search
MKNIQSFIKQSDDFQSIFNGLKEGLKEQLLAGLSGSVRSLFTAAISDELKRPMFIVTHNL
YQAQKVTDDLASVMPDRSVLLYPVNELIASEIAVASPELRAQRLDVLNRLANGENPIVVT
PAAAVRRMLPPVELWKESQIHLKVGEEIDLEAFSKQLVQIGYDRTSMVAAPGDFSVRGGI
IDIYALTEDHPIRIELFDTEVDSIRSFHSDTQRSLETLQEIKIGPAKELIVRGPERVRAI
EQLDEGLASSLKKFNSDKQKELLHQNISADREKLLEGIVTQEMTKYLSYFYEKPASLLDY
TSQDTIIILDEISRIQEMEEQLEQEEADWTISLLEEGNILHDLALSFPFQELFNQQSRSI
LYYSLFLRHVQQTNPQNIVNVSSKQMQNFHGQMNVLASEIERYKKQNYTVVFLGADEERT
EKLSSVLHDYDIEAALAKPDAELVSGQVYILQGELQTGFELPLSKIAVITEGELFKKRVK
KQARKQKLTNAERIKSYSELQVGDYVVHINHGIGKYLGIETLEIGGIHKDYLNIHYQGSD
KLYVPVEQIDQVQKYVGSEGKEPKLYKLGGSDWKRVKKKVESSVQDIADDLIKLYAEREA
SKGYAFSPDHEMQRQFESAFPYQETDDQIRSIHEIKQDMERERPMDRLLCGDVGYGKTEV
AIRAAFKAIADGKQVALLVPTTILAQQHFDTIMDRFQDYPVKIAQLSRFRTRKETTETLK
GLKNGTIDMVIGTHRLLSKDIVYKDLGLLIIDEEQRFGVTHKEKIKQMKANIDVLTLTAT
PIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNGALVREAIERELARGGQVYFLYN
RVEDIERKADEISMLVPDAKVSYAHGKMSENELESVMINFLEGESDVLVSTTIIETGVDI
PNVNTLIVHDADKMGLSQLYQLRGRVGRSNRVAYAYFTYRKDKVLSEVAEKRLQAIKEFT
ELGSGFKIAMRDLTIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEERRGDTTAQEKFE
PEIDLQIDAYIPDSYISDGKQKIEMYKQFRAIGSIEERKELQDEMIDRFGEYPQEVADLF
TIATMKVYAVQERVELIKMEKGIVRLTLDEKASSDIDGQKLFELGSQYGRDIGLGMEGSK
LIISVQTKGKKTEEWLEVVLRMLRGLQDVKKETIPSS
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaatatacaatcatttatcaaacaaagtgatgattttcagtccatttttaatggg
ctaaaggaaggtttaaaagaacaactgctcgccggactatcaggctccgtcagatcttta
tttacagccgccatatcagacgaattaaagcggccgatgtttattgtgacacacaactta
tatcaagcgcagaaggtcacagatgatctagcaagtgtgatgccagatcgctcggttctt
ctttatcctgtcaatgaactcattgcatctgaaattgctgtggcaagcccggagcttaga
gcgcagcgtcttgatgtattgaatcgtctcgcgaatggagaaaatccgattgtcgtgacc
ccagcagctgcagtgcgtagaatgcttcctcctgttgagctctggaaggagagtcagatc
catttaaaggttggtgaagaaattgatttggaggcgttttcaaaacaactcgtgcaaatc
ggttatgaccggacgtccatggtcgctgcgcccggagactttagtgtgcgcggaggcatc
attgacatttatgcgttaacggaagaccacccgatccgtattgagctgtttgatacagaa
gtggattctattcggtccttccactctgacacgcagcgttcattggaaacacttcaagaa
atcaagattggcccggcgaaagagctgattgtaagagggcctgaacgagtgagagcgatt
gaacagcttgacgaaggtcttgccagcagcttaaagaaattcaactcggataaacaaaaa
gaactgctccatcagaatatttctgctgatcgtgagaagctgctagaaggtattgtgaca
caagaaatgacgaagtatctgtcctatttctatgaaaagcctgctagtttgctagattat
acatcgcaggatacgataatcattctagatgaaatcagcagaattcaggagatggaagaa
cagcttgaacaggaagaagcagattggacaattagtctgctcgaagaagggaatatcctg
catgatctagccctttccttcccatttcaagagctgttcaatcagcaatcgagatcgatt
ctgtactattccttatttttgagacatgttcagcagaccaatccgcaaaatatcgtcaat
gtatctagtaagcaaatgcagaatttccacggccagatgaatgtgcttgcaagtgaaatt
gaacgctacaaaaagcagaattatacggttgtctttttaggtgcggatgaagagcggaca
gagaagttgtcatctgtcttgcatgattatgacattgaagcagctcttgctaaacctgat
gctgagcttgtcagcgggcaagtatatattttacaaggtgagcttcaaaccggttttgaa
ctacctttatccaaaattgctgtcattacagagggtgaacttttcaagaaacgtgtgaag
aagcaggcacgtaagcaaaagctgacgaacgcagagcgaatcaaaagctattcagagctg
caagtgggcgattatgtggtgcacattaaccacgggatcggtaagtatttaggaattgaa
acgcttgaaattggcggcattcataaagattatttaaatattcattatcaaggaagcgac
aagctttatgtccctgttgaacaaattgatcaggtgcagaagtatgtagggtcagaagga
aaagaaccaaagctatataaactaggcggcagcgactggaaacgtgtgaagaaaaaagta
gaatcatctgtgcaggacattgcagatgatctgattaagctgtacgcagaacgtgaagca
agcaaagggtatgccttctcgcctgaccatgagatgcagcgccagtttgaatctgcattc
ccttaccaagaaacagatgatcaaattcgctcgattcatgaaatcaagcaagacatggag
cgggagcgcccgatggatcgtctgctttgtggagatgtgggctatggaaaaacagaggtg
gcgattcgagcggccttcaaagccattgctgacgggaagcaggtggcactgcttgtacca
acaacgatcttagcgcagcagcattttgacacgattatggacagattccaagactatcct
gttaaaatcgctcagcttagccgcttccgtacacgaaaagaaacaacagaaaccttaaaa
gggctgaaaaacggaaccattgatatggtcattgggacgcatcgtcttctttcaaaagac
attgtgtacaaggatttaggactgttaattatcgatgaagagcagcgctttggtgtgacg
cataaagagaaaattaagcaaatgaaagccaatattgatgtgctgacgttaacggcaacg
ccaattcctcgtacgcttcatatgtcgatgcttggcgtacgtgacttatctgttattgaa
acgccacctgagaaccgtttcccagttcaaacctatgttgtcgagtacaatggtgcgtta
gttagagaagctattgagcgagaattggcaagaggcggtcaagtgtacttcctttataac
cgagtggaggatattgaacgaaaagcagatgaaatctcgatgcttgttccagacgcaaaa
gtaagctacgcacacgggaaaatgagtgagaacgagctggaatccgtgatgattaatttc
ctagaaggtgaatcggatgtactcgttagtacaaccattatcgaaacgggcgtagacata
ccaaatgtgaacacgctcattgttcatgatgctgataaaatggggctttcgcagctgtac
cagttaagaggacgagttgggcgctcgaatcgtgtggcctatgcttatttcacttatcga
aaagataaagtgctttctgaagtagctgagaaaagacttcaagccattaaagaattcact
gagcttgggtcaggctttaaaattgcgatgcgtgatttaacaattcgaggagcagggaac
ttacttggtgcacagcagcatggatttattgattctgttggattcgacctttactctcaa
atgctgaaagaagccattgaagaaagaagaggcgatacgactgctcaagaaaaatttgag
ccggaaattgatctccaaattgatgcctacattccagatagctatatttctgatggcaaa
caaaagatcgagatgtataaacagtttagagcgattggatcaatagaagagcggaaagag
cttcaagatgaaatgattgaccgattcggagaatatccgcaagaagtggctgatttgttc
acgattgcgacgatgaaggtgtacgctgtgcaggaacgtgtcgagttgatcaagatggag
aaaggcattgttagactcactctcgatgaaaaagcaagcagcgacatcgatggtcaaaaa
ttatttgagcttggcagtcaatatggacgtgatatcggtcttggcatggaaggcagcaag
ctgattatttctgtccaaacaaaaggcaagaaaacggaggagtggcttgaagtcgttctt
cgtatgcttcgaggtcttcaagatgtgaaaaaagaaaccattccatcttcataa
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