KEGG   Bacillus sp. E25: DPQ26_18290
Entry
DPQ26_18290       CDS       T11166                                 
Name
(GenBank) ribonuclease J
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
baez  Bacillus sp. E25
Pathway
baez03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:baez00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    DPQ26_18290
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:baez03019]
    DPQ26_18290
Messenger RNA biogenesis [BR:baez03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     DPQ26_18290
SSDB
Motif
Pfam: RNase_J_b_CASP RNase_J_C Lactamase_B Lactamase_B_2 RMMBL Anti-Pycsar_Apyc1 DUF4453
Other DBs
NCBI-ProteinID: AXR23616
LinkDB
Position
3523099..3524766
AA seq 555 aa
MKTLQSGKTKIFALGGLGEIGKNMYVIEYEDEIIIVDAGFKFPESELLGIDYVIPDYTYL
ERNKDKIKGLFITHGHEDHIGGVPFLFKRIQVPIYAGKLAAALIKSKFEEHNIRHVEIRN
ILDETEIEFQHMKVRFYRTTHSIPDAFGIVVTTPNGNVVHTGDFKFDFTPVGTEANLHKI
AEIGKEGVLCLLSDSTNSEVPGFSMSEKKVGQSVKEIFSGAQGRILFATFASNVHRLQQV
VEASILYNRKIVVVGRSMEKTIQIGRDLGYIQAPEDIFVGVHEINHIPSHQVTIICTGSQ
GEPMAALSRIAYNNHLQIQIIPGDTVVLSSSPIPGNVLSVNRTINQLYRVGANVIHHKIC
DIHTSGHGAQEEQKLMLSLLKPNYFMPIHGEYRMLKKHVELAVECGVPIENCFIMDNGQI
LEISKGEASISSKTIPSQAVYVDGSGIGDIGNIVLRDRRILSEEGIIIISLNLDCKQKRL
ISPPAIVTRGFVYMRESEVLMKEIENVVFECITSLLNEGIVSWAQIKQTLVDVLGSFLFS
KIGRRPMILPIIMEV
NT seq 1668 nt   +upstreamnt  +downstreamnt
atgaaaacactacaaagtggaaaaacaaagatttttgctttaggtggccttggagaaatt
gggaaaaacatgtatgtcattgagtatgaagatgaaatcatcattgtagatgctggattt
aaatttcctgaatctgaactattaggtattgattatgttatacccgattatacgtatcta
gaaagaaataaagataaaataaaaggattattcatcacacacggacatgaagatcatata
ggcggggttccctttctatttaaacgcatacaagtaccgatatatgctggaaagctagct
gcagcattaattaaaagtaaatttgaagaacataatatccgccatgttgaaataagaaat
atattggatgaaacagaaattgaatttcaacacatgaaagtacgtttttaccgaacaaca
catagtattcctgacgcatttggtatagtagtaaccactccaaacggaaatgttgtacat
actggtgattttaaattcgattttacacccgttggtaccgaggcgaacctacacaaaatt
gctgaaatcggaaaagaaggtgtattgtgtttactatctgacagtacaaatagtgaagtt
cctggcttttcaatgtcagaaaaaaaggttggacaatccgtaaaggaaatcttttcaggg
gctcagggacgtatcttatttgcaacttttgcatctaacgttcacagattgcaacaggtt
gtagaggcttctattttatataatcgtaaaattgtagttgtaggaagaagtatggaaaaa
acaattcaaataggaagagacttagggtacatccaagctccagaggacatattcgttggc
gtacatgaaatcaatcatattccaagtcatcaagtaactattatatgtacgggtagtcaa
ggagaaccaatggcagctttatcaagaattgcgtataataatcacctacaaattcaaatt
attcctggggatacagttgtactctcttcctctccgatcccagggaatgtattaagcgtt
aatagaactattaatcagctttatcgagtaggtgcaaatgtaattcatcataaaatatgt
gatattcatacatctggccatggagcacaagaagaacaaaaattgatgctctccctttta
aaaccgaactatttcatgcctattcatggagaatatcgtatgttaaaaaagcatgtagaa
ttagctgtagaatgtggtgttcctatagaaaactgttttattatggataatggtcaaata
ttagaaatctccaaaggagaagcaagtattagtagtaaaactataccttctcaggctgtg
tatgttgacgggagtggtataggtgatattggaaacattgttttacgtgaccgtagaatt
ctatctgaagaaggaatcattattataagtctgaatttagattgtaaacaaaagcgatta
atatctccgccagcaattgttacaagaggctttgtatatatgcgtgaatcagaagtatta
atgaaagaaatagaaaatgttgtttttgagtgtataacttctttattaaatgaaggaatt
gtgagctgggctcaaataaaacagacccttgtagatgtgttagggtcatttctattttca
aaaatcggacgtcgtcctatgattcttccaatcattatggaagtgtaa

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