Bacillus sp. E25: DPQ26_18290
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Entry
DPQ26_18290 CDS
T11166
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
baez Bacillus sp. E25
Pathway
baez03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
baez00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DPQ26_18290
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
baez03019
]
DPQ26_18290
Messenger RNA biogenesis [BR:
baez03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DPQ26_18290
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
DUF4453
Motif
Other DBs
NCBI-ProteinID:
AXR23616
LinkDB
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Position
3523099..3524766
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AA seq
555 aa
AA seq
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MKTLQSGKTKIFALGGLGEIGKNMYVIEYEDEIIIVDAGFKFPESELLGIDYVIPDYTYL
ERNKDKIKGLFITHGHEDHIGGVPFLFKRIQVPIYAGKLAAALIKSKFEEHNIRHVEIRN
ILDETEIEFQHMKVRFYRTTHSIPDAFGIVVTTPNGNVVHTGDFKFDFTPVGTEANLHKI
AEIGKEGVLCLLSDSTNSEVPGFSMSEKKVGQSVKEIFSGAQGRILFATFASNVHRLQQV
VEASILYNRKIVVVGRSMEKTIQIGRDLGYIQAPEDIFVGVHEINHIPSHQVTIICTGSQ
GEPMAALSRIAYNNHLQIQIIPGDTVVLSSSPIPGNVLSVNRTINQLYRVGANVIHHKIC
DIHTSGHGAQEEQKLMLSLLKPNYFMPIHGEYRMLKKHVELAVECGVPIENCFIMDNGQI
LEISKGEASISSKTIPSQAVYVDGSGIGDIGNIVLRDRRILSEEGIIIISLNLDCKQKRL
ISPPAIVTRGFVYMRESEVLMKEIENVVFECITSLLNEGIVSWAQIKQTLVDVLGSFLFS
KIGRRPMILPIIMEV
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgaaaacactacaaagtggaaaaacaaagatttttgctttaggtggccttggagaaatt
gggaaaaacatgtatgtcattgagtatgaagatgaaatcatcattgtagatgctggattt
aaatttcctgaatctgaactattaggtattgattatgttatacccgattatacgtatcta
gaaagaaataaagataaaataaaaggattattcatcacacacggacatgaagatcatata
ggcggggttccctttctatttaaacgcatacaagtaccgatatatgctggaaagctagct
gcagcattaattaaaagtaaatttgaagaacataatatccgccatgttgaaataagaaat
atattggatgaaacagaaattgaatttcaacacatgaaagtacgtttttaccgaacaaca
catagtattcctgacgcatttggtatagtagtaaccactccaaacggaaatgttgtacat
actggtgattttaaattcgattttacacccgttggtaccgaggcgaacctacacaaaatt
gctgaaatcggaaaagaaggtgtattgtgtttactatctgacagtacaaatagtgaagtt
cctggcttttcaatgtcagaaaaaaaggttggacaatccgtaaaggaaatcttttcaggg
gctcagggacgtatcttatttgcaacttttgcatctaacgttcacagattgcaacaggtt
gtagaggcttctattttatataatcgtaaaattgtagttgtaggaagaagtatggaaaaa
acaattcaaataggaagagacttagggtacatccaagctccagaggacatattcgttggc
gtacatgaaatcaatcatattccaagtcatcaagtaactattatatgtacgggtagtcaa
ggagaaccaatggcagctttatcaagaattgcgtataataatcacctacaaattcaaatt
attcctggggatacagttgtactctcttcctctccgatcccagggaatgtattaagcgtt
aatagaactattaatcagctttatcgagtaggtgcaaatgtaattcatcataaaatatgt
gatattcatacatctggccatggagcacaagaagaacaaaaattgatgctctccctttta
aaaccgaactatttcatgcctattcatggagaatatcgtatgttaaaaaagcatgtagaa
ttagctgtagaatgtggtgttcctatagaaaactgttttattatggataatggtcaaata
ttagaaatctccaaaggagaagcaagtattagtagtaaaactataccttctcaggctgtg
tatgttgacgggagtggtataggtgatattggaaacattgttttacgtgaccgtagaatt
ctatctgaagaaggaatcattattataagtctgaatttagattgtaaacaaaagcgatta
atatctccgccagcaattgttacaagaggctttgtatatatgcgtgaatcagaagtatta
atgaaagaaatagaaaatgttgtttttgagtgtataacttctttattaaatgaaggaatt
gtgagctgggctcaaataaaacagacccttgtagatgtgttagggtcatttctattttca
aaaatcggacgtcgtcctatgattcttccaatcattatggaagtgtaa
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