Borrelia afzelii (FLI): BAPKO_0239
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Entry
BAPKO_0239 CDS
T00383
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
baf
Borrelia afzelii (FLI)
Pathway
baf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
baf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BAPKO_0239 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
baf03021
]
BAPKO_0239 (rho)
03019 Messenger RNA biogenesis [BR:
baf03019
]
BAPKO_0239 (rho)
Transcription machinery [BR:
baf03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
BAPKO_0239 (rho)
Messenger RNA biogenesis [BR:
baf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
BAPKO_0239 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
NACHT
AAA
Spore_III_AA
DUF5091
AAA_22
DUF1269
AAA_25
OB_RNB
Motif
Other DBs
NCBI-ProteinID:
ABH01497
UniProt:
Q0SNT1
LinkDB
All DBs
Position
complement(234504..236051)
Genome browser
AA seq
515 aa
AA seq
DB search
MDKKNVGFDLENEIRRLDASKEFKIEDNLKKKVVKVVAKKDSTSNVTKSADLSGAKDSNG
VVFSEFDYDIPASGLENSIKTLEQSNIIKFFNGKDYVEIEKLYDKPITEVRKIVEGLGTN
HTIAVTMKKTELIFLLVKILSENDINVLFTGVLDVLSDGYGFLRTASNSYLSGGNDVYVS
PSQIRLFNLRTGDILYGQIRSPRDGERFFAMVKIKSINNQDPTFAQNRIPFDNLTPLYPN
IKLNLEYENCNISTRLINLFSPIGKGQRALIVSPPKAGKTTLLQKIANAITTNYSDVILM
ILLIDERPEEVTDMIRSVKGEVIASNFDEQASRHVQVAEMVIEKAKRLVENKKDVVILLD
SITRLARAYNQTMPTSGKILSGGVDSNALHKPKRFFGSARNIEEGGSLTIIATALVDTGS
KMDEVIFEEFKSTGNMELILDRSLADRRLFPAINIKKSGTRKEELLLSEEERSKILLIRR
ILGGVDDYEGVEVLIEKMKKSKNNEIFLKTMSNGN
NT seq
1548 nt
NT seq
+upstream
nt +downstream
nt
atggacaaaaaaaatgttggatttgatttggaaaatgaaataaggcggttggatgcttct
aaagagtttaagattgaagataatttgaaaaaaaaagtggttaaagttgttgctaaaaag
gattctacatctaacgtgacaaaatctgcagatttaagtggtgcaaaagattcaaacggt
gtagtattttctgaatttgattatgatattcctgcttcaggtttagaaaatagtattaaa
actttagagcaaagtaatattattaagttttttaatggtaaagattatgtagagattgaa
aaactttatgacaagccaattacagaggttaggaaaattgttgaaggtcttgggaccaat
catactattgctgtaacaatgaaaaaaaccgaattaatatttttattggtgaaaatatta
agcgagaatgatattaatgttttatttacaggtgtacttgatgtacttagtgatggttat
gggtttttgagaactgcatcaaattcttatctttcaggaggtaatgatgtttacgtttct
ccttctcagattagactttttaatttaagaaccggggatattttatatggccaaattaga
tctcctagagatggtgagagattttttgccatggttaaaattaaatctattaataatcaa
gatcctacgtttgctcaaaacagaataccttttgataatttaactcctctttatcccaat
attaaattgaatcttgaatatgaaaattgcaatatttctacaaggcttattaatcttttt
tcacctataggtaagggacaaagggctttaatagtttctcctccaaaggcgggaaagacc
accttgcttcaaaaaatagctaacgcaataaccaccaattattcggatgttattttaatg
atattgcttattgatgagaggccagaagaagtaacagatatgattcgcagtgttaaaggt
gaagtgattgcatctaattttgatgagcaggctagtaggcatgttcaggtagcagagatg
gttattgaaaaggcaaaaagacttgttgaaaacaaaaaagatgttgttattttgcttgat
tctattacaaggcttgcgagggcatataatcaaactatgccaacttctggtaaaatttta
tcgggcggagtagattctaatgctcttcataagccaaagaggttttttggatctgctaga
aatattgaggaagggggaagtttgactattatagctactgctttggttgatactggcagt
aaaatggatgaagttatttttgaagaatttaaaagtaccggtaatatggaattaattctt
gatagaagtttggcggacagaagacttttccctgctattaatattaaaaagtcaggtacc
agaaaagaagagctactacttagtgaagaggaacgttctaagattttgcttattagaaga
atactcggaggtgttgatgattatgagggggttgaagttctgatagaaaagatgaaaaaa
agcaaaaataatgagatctttttaaagacaatgagtaatggcaattaa
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