Bacillus sp. FCW2: K3G25_19795
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Entry
K3G25_19795 CDS
T10657
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bafc Bacillus sp. FCW2
Pathway
bafc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bafc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
K3G25_19795 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bafc03400
]
K3G25_19795 (mfd)
Enzymes [BR:
bafc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
K3G25_19795 (mfd)
DNA repair and recombination proteins [BR:
bafc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
K3G25_19795 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
Cas3-like_C_2
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
UHC64922
LinkDB
All DBs
Position
3970360..3973893
Genome browser
AA seq
1177 aa
AA seq
DB search
MDNIQTFIKESDDFKSIVNGLHEGLKEQLLAGLSGSARSVFTSALAQETKRPIFFITHNL
YQAQKVTEDLTALLGDQSVFLYPVNELISSEIAVASPELRAQRLDVINRLTNGEAPIVVA
PVAAVRRMLPPKELWKSSQLVISLGDEIEPDQLSARLVEVGYERSDMVSAPGEFSIRGGI
IDIYPLTSEHPVRIELFDTEVDSIRSFNSDDQRSIETLKHVAIGPAKELIIRAEEKARAM
ERLDKGLADSLKKLKQDKQKEMLHINISHDKERLSTGQTDQELVKYLSYFYEKPASLLDY
TPADTLLLLDEVSRIHEMEDQLQKEEAEFTTSLLEEGKILHDIHLSFSFQELMSEKRRPA
IYYSLFLRHVQHTSPQNIVNVTSRQMQSFHGQMNVLAGEMERFKKSNFTVVFLGANKDRT
DRLASVLADYEIEAAKTDSSKALVQGQVYVMEGELQSGFELPLMKLAVITEEELFKNRIK
KKPRKQKLTNAERIKSYSELQVGDYVVHVNHGIGKYLGIETLEIKGIHKDYLNIHYQGSD
KLYVPVEQIDQVQKYVGSEGKEPKLYKLGGSEWKRVKKKVENSVQDIADDLIKLYAEREA
SKGYAFSPDHEMQRQFESAFPYQETEDQLRSIQEIKKDMERERPMDRLLCGDVGYGKTEV
AIRAAFKAIADGKQVALLVPTTILAQQHYETIMERFQDYPINIGLLSRFRTRKESNETIK
GLKNGTVDIVIGTHRLLSKDVVYKDLGLLIIDEEQRFGVTHKEKIKQIKANVDVLTLTAT
PIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNGALVREAIERELARGGQVYFLYN
RVDDIERKADEISMLVPDAKVAYAHGKMTENELESVMLNFLEGESDVLVSTTIIETGVDI
PNVNTLIVFDGDKMGLSQLYQLRGRVGRSNRVAYAYFTYRRDKVLTEVAEKRLQAIKEFT
ELGSGFKIAMRDLTIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEERKGDIPKSEQFE
TEIDIELDAYIPENYIQDGKQKIDMYKRFRSIATIEEKNELQDEIIDRFGSYPKEVEWLF
TVAEMKVYGKYERVELIKQDKDAIRFTISEEASAQIDGQKLFELGNKYGRQIGLGMEGKK
LKISVQTKGRKTEEWLETVLGMLKGLQDVKKETIASS
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atggacaacattcaaacctttattaaagaaagcgatgattttaaatccattgtcaacggt
ttacatgaggggctgaaggaacagctgcttgcgggtctgtcaggttccgcgcgttctgtt
ttcacctccgcccttgcacaggaaacgaaaaggccgattttctttatcacccataattta
tatcaggcccaaaaagtgacggaagatctgacggcgcttctcggggatcaatctgttttt
ttataccccgtaaatgaattgatttcttcagaaattgcggtagcgagccctgaactgcgc
gctcagcggcttgatgtcattaatagattaacaaacggagaagcgccgatcgttgtggcg
cccgttgcggcagtgagaagaatgcttccgccgaaggagctgtggaaaagcagccagctc
gtcatttcactcggagacgaaatagaaccggatcagctgtccgcgcgccttgtagaggtg
gggtatgagcgttccgatatggtttctgcacccggtgaattcagtattcgcggcggaatt
atcgacatttatccgctgacgtcggagcatccggtgcgaattgaactgtttgatacggag
gtcgattccatcagaagcttcaattctgatgaccagagatcaattgagacgctcaaacat
gtggcgatcggaccggcgaaggaattgatcatcagggcggaagaaaaagcccgtgcgatg
gaaaggctcgataaagggcttgccgacagtctgaaaaagctgaagcaggacaaacaaaag
gaaatgcttcatatcaatatctcacatgataaagaacggttatcaacgggacagactgat
caggaacttgtgaagtatctctcgtacttttacgaaaagcctgctagtttgctagattat
acaccggcagacacgttgttactgttagacgaggtcagccgcattcatgaaatggaggat
cagctgcaaaaagaagaggccgaatttacgacaagtctgctcgaggaagggaaaattctg
cacgacattcatttatccttcagctttcaggagcttatgagcgaaaagcggcgcccggct
atttattattcattatttttgcgtcatgtccagcatacaagccctcagaatatcgtgaat
gtgacaagcaggcagatgcagagttttcacgggcagatgaatgtgctcgcaggtgaaatg
gagcgctttaagaaatcaaacttcaccgtcgtctttttaggcgcgaataaggacagaacc
gacagattggcatccgtgctggctgattacgaaattgaagccgcaaaaacggacagctcc
aaagcgcttgtgcaaggacaggtctatgtcatggaaggcgagctgcaatccggttttgaa
ctgccgctgatgaagctggccgtcattacggaggaagagctgttcaaaaaccgaattaag
aaaaagccgagaaagcagaagctgacaaatgccgaacggatcaaaagctattccgagctt
caagtcggtgactatgtcgtccacgtcaaccacgggatcggtaagtatttggggattgaa
acactagaaatcaaaggcattcataaagattacctcaacattcattatcagggcagcgat
aagctgtacgtccctgtagaacaaatcgaccaggtgcagaagtacgtcggctctgaagga
aaagaaccgaagctttataaactgggcggcagtgaatggaaacgggtgaagaaaaaagtt
gaaaactccgttcaggatattgccgatgatctgattaagctttatgcggaacgggaagca
agcaaaggctatgcgttctcgccggatcatgaaatgcagcggcagttcgaatctgctttc
ccttatcaggaaacagaggaccagctccgttccattcaggagattaaaaaggacatggaa
agagagcgtccgatggaccgtttgctttgcggtgatgtcggttacgggaagacggaggta
gccatccgagcggcctttaaagcgatcgcagacggaaagcaggtcgcgcttcttgtgccg
acgacaatactcgcgcagcagcattatgaaaccattatggagcgtttccaggactatccg
attaacatcggtcttctcagccgattcagaacgagaaaagaatccaatgaaacgattaaa
ggcctgaaaaacggaactgtagacatcgtaatcggaacccacaggctcttatctaaagac
gtcgtctataaagatctcggcttgctcatcattgatgaagagcagcgctttggcgtaacg
cataaggaaaaaatcaaacagatcaaagccaatgtcgatgtgctgactcttacagcgacg
ccgataccgcgtacgcttcatatgtccatgctcggtgtgcgggacttatctgttattgaa
acgccgccggaaaaccgtttccctgttcagacatatgtcgtggaatacaacggcgcactt
gttcgggaagccatcgaaagagaactggcgcgcggaggacaggtatatttcttgtacaac
cgcgtggatgacatcgagcggaaggctgatgaaatttccatgcttgttcccgatgcgaaa
gtggcatatgcccacggaaaaatgactgaaaatgaattggaaagcgtcatgctcaatttt
ctggagggggaatcagacgtccttgtcagcacgactattattgagacaggcgtagatata
ccaaatgtcaataccttgattgtgttcgacggagacaaaatggggctgtctcagctgtat
cagctgagaggacgggtcggccgttccaaccgcgtcgcttacgcgtattttacgtaccgc
agagacaaagtgctcactgaggtggcggaaaaacggctgcaggcgattaaagaatttacc
gagctgggatctggctttaaaatcgccatgcgtgacttgacgatcaggggagcggggaac
cttctcggcgcccagcagcacggctttattgactcagtcggttttgacctgtactcgcaa
atgctcaaggaagcgattgaagagcggaaaggcgatattccgaaaagcgaacagtttgag
acagaaatcgatatcgagctagacgcgtatattcctgaaaactatatacaagacggcaag
caaaaaatcgacatgtacaaacggttcaggtcgatcgccacaattgaggagaaaaatgag
cttcaagatgaaatcatcgacaggttcggcagctaccctaaagaggttgaatggctgttt
acggttgctgagatgaaggtatatggaaaatatgaacgcgtcgaactcatcaagcaggat
aaagacgcgatcagatttaccatttctgaagaggccagcgcacagattgacggccagaaa
ttgttcgaactcggcaataaatacggccggcagatcggactgggaatggaagggaaaaag
ctgaaaatctcagtacagacgaaaggccgcaaaacggaagagtggctggagaccgtgctc
ggcatgctgaaaggccttcaggatgtgaagaaagaaacaatcgcgtcctcataa
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integrated database retrieval system
