Borreliella afzelii K78: BAFK78_382
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Entry
BAFK78_382 CDS
T03895
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bafe
Borreliella afzelii K78
Pathway
bafe03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bafe00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BAFK78_382 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bafe03021
]
BAFK78_382 (rpoC)
03400 DNA repair and recombination proteins [BR:
bafe03400
]
BAFK78_382 (rpoC)
Enzymes [BR:
bafe01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BAFK78_382 (rpoC)
Transcription machinery [BR:
bafe03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BAFK78_382 (rpoC)
DNA repair and recombination proteins [BR:
bafe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BAFK78_382 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
WHD_MCM
Motif
Other DBs
NCBI-ProteinID:
AJY72377
LinkDB
All DBs
Position
complement(398463..402596)
Genome browser
AA seq
1377 aa
AA seq
DB search
MKEIKDFEKIKIKIASPDQIRNWSYGEVKKSETINYRTLRPEKDGLFCERIFGTTKEWEC
YCGKFKSVRYKGIICDRCNVEVTHFKVRRERMGHIELAAPVAHIWYYKYIPSRIGLLLDI
TASSLNSILYYEKYVVIEPGDTDLKKMQLLNEDEYIEARERYGMSFNASMGAEAIKSLLE
NLDLDELSSKLRIQMIDKDDKTDKKLLRRLEIIENFKISGNKPEWMIMEVLPVIPPEIRP
MVQLDGGRFATSDLNDLYRRVINRNNRLRKLLLLNAPEIIVRNEKRMLQESVDSLFDNSH
KRKVVKGSSSRPLKSLSDALKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKLHQCGLPAK
MALELFKPFVIRRLIESEAVFNIKRAKNLIEQEVDEVWQILDLVIKEHPILLNRAPTLHR
LGIQAFEPVLVEGKAIKLHPLVCHAYNADFDGDQMAVHVPLTPSAQAESWALMLSTNNLL
NPANGHPIVFPSQDIVLGLYYLTMEKKNTVGEGKKFLNFNNVILAINNRSLDYNASIYVK
IDGKYKKTTAGRVIFNEALPNGIEFVNKTLSDLELQILISKVYVVHGSSTVIEMLDIIKE
LGFKYATKFGCTISMSDIIVPDEKKAYIDRANKEIAKIQNDYAKGVITGEERYNNVVSVW
LNTNEELTNKMMEILKKDRDGFNVIYMMADSGARGSRNQIRQLAGMRGLMAKTSGDIIEL
PIISNFKEGLSVIEFFISTNGARKGLADTALKTADAGYLTRRLVDIAQDVVVRIEDCGTI
NGIKVETVKNGEEILESLKEKAVGSYSIERIKNPITGEIVLDANEEISEAKIELLEKIGI
EKLVIRSVLTCEAEHGVCQKCYGRDFSKNKPVNIGEAVGIIAAQSIGQPGTQLTMRTFHI
GGVAQAGSEDDKISLKNTFILNGIEGFNVRVENGILFTRKGTLKIINVFYEEKIKNIKEI
KVSDSQRVIKGIPLFVNNKGVEILSSYIGYVKLRDDKFLIVSEEQEVFLKAGTKLEIEVG
EYVESGKVIGTFDPFAEPIIAEVKGKIKFKDIILGTTLKEEINTETGNVEKRITDNVFES
LDPRIFIIDSGGVEIASYVLPGDAYLQVEDGQNINIGDIIAKLSKGSEKTQDITGGLPRV
NDLFETRIPKNLTEMAKVSGIVQFKSIQKGKRLINILDEYGVEHKHYIPAGKHLLVRDGD
IVKAGDMLCDGRINPHDVLEILGGISLQEFLLAEIQDVYRKQGVSINDKHIGVIIKQMMK
KVKIVAVGDTNFVYGQKVDKHTFYEQNRKVIEQGGEPAIASPILIGVTKTSLNIDSFISA
ASFQETTKVLTDASIAGKIDDLRGLKENVVIGHLIPTGTGMGLYKKIKVSENVNSEV
NT seq
4134 nt
NT seq
+upstream
nt +downstream
nt
atgaaagagataaaagattttgaaaaaataaaaattaaaatagcatctcctgatcaaatt
agaaattggtcttatggagaggttaaaaagtctgaaactattaattatagaactttgaga
cccgagaaggatgggcttttttgtgagaggatttttggtactacaaaggaatgggaatgt
tattgtggtaaatttaaatcagttagatataaaggcattatttgcgatcgttgtaatgta
gaggttacccattttaaggtgaggcgtgagagaatggggcatattgagttagcagctcca
gttgctcatatttggtattataaatatatcccctctaggattggtcttttgcttgacatt
acggcatctagtttgaattctattctgtattatgaaaaatatgtggtaattgaaccgggt
gatactgatcttaaaaaaatgcagcttttaaatgaagatgagtacatagaggctagagag
cgatatgggatgtcttttaatgcttctatgggagctgaagctattaaaagtcttcttgaa
aatcttgatcttgatgagctttcatctaagcttagaattcaaatgatagataaagatgat
aaaactgataagaaactcttaagacgtcttgaaattattgaaaattttaaaatttctgga
aataaaccagaatggatgattatggaagttctccctgttatacccccagagattaggcca
atggttcagcttgatggaggacgctttgcaacatctgatcttaatgatctttacagaaga
gttataaataggaataatcgcttaaggaagttgcttcttcttaatgcgccagagattatt
gtgagaaatgaaaaaagaatgcttcaagaatcggtagactctctttttgacaattctcat
aaaagaaaggttgttaaaggctcatctagtaggcctcttaagtcgctttccgatgcgtta
aaaggtaagcagggaaggtttaggcaaaatcttcttggtaaaagagtagattattctggt
cgttctgtgattgttgttggacctgagttaaaactacatcaatgtggattgcctgcgaaa
atggctcttgagctgtttaagccttttgtgataagaaggttgattgagagtgaagctgtt
tttaatattaaaagagcaaagaatttgatcgaacaagaagttgacgaggtatggcaaatt
ttagatcttgttattaaagagcatcctattcttttaaatagggcacctacccttcataga
cttggaattcaagcttttgagcctgtgttagttgagggtaaggcaataaaattacatcct
cttgtttgtcatgcatataatgctgattttgatggtgatcaaatggcagtacatgtacct
cttactccatcagcacaagctgaaagttgggctttaatgctttcaacaaataatctttta
aatcccgctaatgggcatcctattgtttttccatcccaagatattgttttaggtctatat
tatttaacaatggaaaaaaagaatactgttggagaaggtaaaaagtttttaaactttaat
aatgttattcttgctataaataataggagtctagattacaatgcttctatttatgtaaaa
attgatggcaaatataaaaaaactacagctggtagggttatatttaatgaggccttgccc
aacggaattgaatttgtaaataaaactcttagtgatttggaactacaaattttaatatca
aaagtttatgtagttcatggttcttctactgtaattgaaatgcttgacattatcaaggag
cttggctttaaatatgctaccaagtttggatgcacaattagtatgagtgatattattgtt
cctgatgaaaagaaagcttatatagacagggccaataaagagattgctaaaattcaaaat
gattatgctaaaggtgttattaccggtgaagagcgttataataacgtagtttctgtttgg
ttaaatacgaacgaggaacttactaataagatgatggaaattttaaagaaagacagagat
gggtttaatgttatatatatgatggcagattctggtgctaggggtagtagaaatcaaata
aggcaacttgctggcatgagaggattgatggcaaaaacttctggggatattattgagctt
ccaattatttctaactttaaagaaggtctttctgtgatagagtttttcatctctacaaat
ggagcgagaaaggggctggcagatactgctcttaagactgctgatgctggatatttaact
cgaagattagtagatattgctcaagatgttgttgttagaatagaagattgtgggactata
aacggaataaaagttgaaactgtaaaaaatggtgaagaaatattagaatctttgaaagaa
aaagctgttgggagctattctattgaaagaataaaaaatccaattactggtgagattgtt
ttagatgcaaatgaagaaatctcagaagctaaaatagaattattagaaaaaattggtatt
gaaaaacttgtgattagatctgttttaacatgtgaagctgaacacggtgtttgtcaaaaa
tgttatggtagagacttttcaaagaataagcctgttaacattggcgaggctgtaggaata
attgctgctcagtctataggtcagccaggcactcaattaactatgagaacttttcatatt
ggtggagttgctcaggctggtagtgaggatgataaaatatctttaaagaatacttttata
cttaatggcatagagggttttaatgttagggttgagaatggaattcttttcacaagaaaa
ggaactttaaaaataatcaatgttttttatgaagaaaaaattaagaacataaaggaaatt
aaagtttcagattctcaaagagtaattaaaggaattcctttatttgttaataataaggga
gtagaaattctctcttcttatattggttatgttaaattaagagacgataaatttttaata
gtgtcagaagagcaagaagttttcttgaaagctggtacaaagcttgaaatagaggttggc
gaatatgttgaatcgggcaaagttattggtacgtttgatccatttgcagagcctattatt
gcagaggttaaaggtaaaattaaatttaaggatattattttaggaactactcttaaagaa
gagataaatactgaaacaggtaatgttgagaaaagaattacagataatgtttttgaatct
cttgatcctagaatttttattattgatagtggtggtgtggagatcgcatcttatgtatta
ccaggcgatgcttatcttcaagttgaagatggtcagaatattaatataggagatattatt
gcgaaactttctaaaggttctgaaaaaactcaagatattacagggggattgcctcgtgtt
aatgatctttttgaaacaagaattcctaagaatttaactgaaatggctaaagtaagtgga
attgtgcaatttaaatcaattcaaaaaggaaaaagacttattaatattttagatgaatat
ggggttgagcataagcattatattccagccggcaaacatcttttagttagagatggagat
attgttaaggcaggagatatgctttgtgatggtagaattaatcctcatgatgtgcttgaa
attttgggtgggattagtttacaagagtttttgttggcagaaattcaagatgtttatcga
aaacagggtgttagcattaatgacaaacatattggtgtgataattaagcaaatgatgaaa
aaagttaagattgtagcagttggtgatactaattttgtttatgggcaaaaggtagataag
cacactttttatgagcagaatagaaaagttattgaacaaggtggtgagccagcaatagca
agtcccattcttataggagtaaccaagacttctcttaatatagattcttttatttctgca
gcttcttttcaggagacaacaaaagtattaacagatgcttctattgctgggaaaatagat
gatcttagaggattgaaagaaaatgttgtaattgggcatttgattcctactggaactggc
atgggactttataaaaaaatcaaagttagtgaaaatgtcaattctgaagtttag
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