Bombus affinis (rusty patched bumble bee): 126914188
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Entry
126914188 CDS
T09368
Name
(RefSeq) collagen alpha-1(I) chain-like
KO
K19719
collagen type II alpha
Organism
baff
Bombus affinis (rusty patched bumble bee)
Pathway
baff04512
ECM-receptor interaction
baff04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
baff00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
126914188
04518 Integrin signaling
126914188
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
baff00536
]
126914188
Glycosaminoglycan binding proteins [BR:
baff00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
126914188
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
PBP1_TM
Motif
Other DBs
NCBI-GeneID:
126914188
NCBI-ProteinID:
XP_050573746
LinkDB
All DBs
Position
3:complement(1124126..1140644)
Genome browser
AA seq
1508 aa
AA seq
DB search
MGPKALRLAAAFAVIQLLLPQVHSIRTKLRKQRSKPLQAQQAANGDYDYDYYEGYDDYDD
RNETTTTTAPSPPVTSSVNTASRGELPTETLQTFYRPGLSTDVPTQATIRTFSQVGILPN
EVQTTPERNHASPTEIVPGESNVISAVAVPGPRGEPGRPGDMGRPGDAGFPGHPGSPGIP
GPPGPPGPIPDVSMYYQQLALSQANQDKGPTGAAAPLYGPEAYLQMQTGPIGPRGPSGPP
GPPGPQGFQGVRGEPGEPGTLGPPGAPGPRGLAGLPGKDGNTGEDGEPGPPGSVGPVGPR
GLPGMPGLPGVKGHRGFPGLDGAKGEQGVSGEKGSMGVPGPMGHIGPMGPAGPRGERGRE
GPPGPPGIRGVDGIAGPPGQPGTVGKPGSPGFPGSPGVKGDQGAQGPKGSQGIQGPRGET
GRPGQPGESGPQGPQGKDGIPGEKGSTGATGLVGAPGFPGARGQPGIPGNPGVPGAKGMP
GLSGERGFKGDSGAKGDSGSPGPRGLPGPPGNEGKRGKRGMRGPIGTSGPAGERGAPGAP
GLPGPDGPMGPKGQSGDRGPIGPMGLRGANGDPGRPGSPGLQGTRGLMGRPGAPGKPGNP
GDRGIQGADGKPGEQGPAGLQGLPGPIGLPGEKGYPGEPGKAGEPGNPGPPGPRGDTGKE
GAPGPQGSPGPSGVDGERGPPGSPGPRGFQGFPGVTGNPGTPGKDGESGVQGPPGPPGIP
GNRGERGFPGERGTPGGPGLTGPRGEPGAQGLDGPPGLPGAKGDRGISGPPGLVGLPGLR
GATGESGQKGERGSSGPPGPEGPSGRIGERGPQGQIGSPGPPGEPAERGDPGLPGPPGEV
GAPGNPGERGPQGLQGLQGFPGPQGLIGLPGLKGDRGYPGLKGDQGNPGLPGSPGETGPQ
GLVGLTGAKGVRGEPGARGEPGIMGPPGVPGIVGAMGPPGAIGPSGPPGLPGSKGNIGET
GRAGNPGPIGNPGSPGADGNKGESGSQGPPGTPGPQGPQGSPGERGLPGLPGPSGPIGAR
GIRGAPGESGVPGKPGPEGPPGPPGQVGPIGPHGPTGEIGAEGPSGKPGPPGIAGRPGDK
GPPGAVGQTGLPGSPGLPGPPGQAGAPGSTGERGPKGETGPQGVEGQQGPRGKPGPIGLE
GPKGDRGEEGQKGAKGHRGFTGLQGLPGPTGLPGEKGIPGLPGLPGKDGESGPRGSPGRD
GSPGPIGLTGNPGPKGPSGEEGRHGPPGPPGPPGPPGPPGELGLGYDAASLAALLGQGQT
KGPDPLVGDEPPRMFSQDMTEEERKELILKAYKQLKSSFQKFVKPDGGKSSPAKTCRDLY
TAYPDKLSGEYWIDPNEGDTRDAILVYCDAKKRATCLLPNPVRSPEINYITDQPETWLSE
IENGMKITYKADSNQIGFLQLLSRHAYQNIIYHCKNSIGYFDSERKTYRKGMKFLTWNDV
ELTPRGNQRLRYEMITDECRTYNGQWGKTVISYETDKPVRLPIIDVALRDIGKPDQSFSI
EIGTVCYE
NT seq
4527 nt
NT seq
+upstream
nt +downstream
nt
atggggccgaaggcccttcggttagccgcggcgttcgccgttatccaacttcttttgccg
caggttcattccatacggaccaaactcaggaaacaacggtccaagccgctgcaagctcaa
caagccgcgaatggtgattacgattacgactattacgagggttacgatgactacgatgat
agaaatgaaactacaactacaactgcgccatcaccacctgttacatccagcgtcaatact
gcaagcaggggtgaattaccgacagagacattgcaaactttctacagacctggactgtct
acagatgtaccaacgcaagcgacaattcgaactttcagtcaagtcggtatattaccaaac
gaagtgcaaacaacaccagaacgaaatcatgcatcaccgacagagattgttcctggtgaa
agtaacgtgattagcgcggtcgctgttcctggacccaggggcgagcctggtcgacctgga
gatatgggtcgtccgggagatgctggatttccaggacaccctggatctccgggaattcca
ggacctccggggccaccaggacctatacccgacgtatcaatgtattatcagcaattagct
ttatctcaagcaaatcaagataaaggaccgacgggagcagcagcacctttgtatggtcca
gaagcctatttacaaatgcaaactggtcctattggaccgcgtggtccatcaggtccacct
ggaccacctggaccacagggttttcaaggagtacgaggagaacctggtgaacctggaact
ttgggtcctccaggagcgccaggtcccagaggattagctggtttaccgggaaaggatggt
aataccggtgaagatggagaacctggtcctccaggatcggttggtccagtcggaccaaga
ggtctaccagggatgcctggtcttcctggtgtaaaaggacaccgaggttttccggggtta
gatggtgcaaaaggagaacaaggtgtatctggtgagaaaggatccatgggcgtacctgga
ccgatgggacatataggcccgatgggccctgcaggtccacgtggtgaaagaggtagagaa
ggtcctcctggacctccaggaattagaggggtggatggtattgctgggccccctggtcag
cctggtacggtaggtaagccaggttctcctggatttccaggtagtccaggtgtaaaagga
gatcaaggagcacaaggaccaaaaggaagccaaggcatacaaggccctcgaggtgaaact
ggtcgtcctggtcaacctggtgaatcaggaccacagggaccccagggaaaagatggaata
cctggagaaaagggaagtacaggagcaactggtttagttggtgctccaggtttccctgga
gctcgcggacaacctgggatacctggcaatcctggtgttccaggagcgaaaggcatgcct
ggactttcaggtgaaagaggatttaaaggtgatagtggagctaaaggtgattcgggaagt
ccagggccacgtggtttgcctggtcctcctgggaacgagggtaaacgaggaaaaagggga
atgcgcgggccaattggtacatccggtcctgccggagaacgtggagcaccaggcgcaccg
ggtcttccgggacctgatggccccatgggacccaaaggtcaatctggagatcgtggacca
attggaccaatggggctcagaggagctaacggagatcctggtcgcccaggatctcccggt
ttacagggtacacgtggtttaatgggtcgccctggtgctcccggaaaaccaggaaaccca
ggagaccgaggaattcaaggtgctgatggaaaaccaggtgaacaaggtccagctggatta
caaggtttacctggtccaataggtctcccaggagaaaagggatatccgggtgaaccagga
aaagctggtgagccaggaaatcctggaccacctggtcctagaggtgatacgggaaaggag
ggagcaccaggacctcaaggttcacctggaccatcaggagtagatggtgaacggggacct
ccaggatctccaggtcctagaggttttcagggttttccaggcgttactggtaatccagga
acaccaggaaaagatggagaatcaggtgttcaaggaccacctggtccaccaggtatacct
ggaaatagaggtgaacgaggatttcctggtgaaagaggtacaccaggaggaccaggatta
acaggaccaagaggagaaccaggcgcacaaggattagatggacctcccggattacctgga
gcaaaaggagatcgaggaatttcaggtccacctggattggtaggattgcctggcttacga
ggagctacgggagagtcaggtcagaaaggagaaagaggatctagtggaccgcctggccct
gaaggaccttcaggacggattggagagcgtggaccacaaggtcaaattggctcaccggga
ccgccaggtgaaccagcagaacgaggcgatcctggattacctgggcctccaggagaggta
ggtgctcctggaaatccaggagaaagaggaccccaaggattacaaggactgcaaggcttc
ccaggaccacaaggactcattggtttaccaggattaaagggtgatcgtggttatccaggt
ttaaaaggagatcaaggaaatcctggcctacctggtagcccaggtgaaactggaccacaa
ggtctagttggtttgacgggagctaaaggagtacgaggagaaccaggcgctagaggagag
cctggtattatgggaccaccaggagtaccaggaatcgttggtgcaatgggcccgccaggg
gcaataggaccatcaggaccgcctgggttaccaggtagtaaaggtaatattggagaaaca
ggacgagccggaaatcctggacctattgggaatccaggttcacctggtgcagatggaaat
aaaggcgagagtggttctcaaggaccaccaggtactcctggtcctcaaggtcctcaaggc
tctcctggcgaaagaggattacctggtttaccaggcccgtctggaccaataggcgctaga
ggaatacgaggagcacctggtgaatctggtgtacctgggaaacctggaccagaaggtcca
cctggacctcctggacaagttggaccaattggaccacatggaccaacaggagaaattgga
gcagaagggcccagtggtaaacctggaccacctggaatagcaggtcgtcctggagataaa
ggaccaccgggagcggtaggacaaacgggattgcccggctctcctggtttacccggacca
cctggtcaagcaggtgctccaggatcaactggagaaagaggaccaaagggagaaacagga
ccacaaggtgtagaaggacagcaaggacctagaggaaaaccaggacctataggattggaa
ggtcctaaaggtgatcgcggagaagaaggccagaagggtgcgaaaggccatcgaggattt
actggtttacaaggtttacccgggcctactggtctaccaggggaaaaaggaatacctgga
cttcctgggctacctggaaaagatggcgaatctggacctagaggtagtcctggacgagat
ggcagccctgggccaattggattaactggcaatccaggaccaaaaggtccttcaggtgaa
gaaggtcgccatggaccaccaggtcctcctggtcctccagggcctccaggtccacctggt
gaacttggattaggatatgatgctgcttctttagctgcacttttaggacaaggtcaaact
aaaggaccagatccattagttggtgatgaaccacctagaatgtttagtcaagacatgaca
gaagaagaaaggaaagaactcattttgaaagcatataaacaattgaaatcatcattccag
aaatttgtaaaaccagatggtggaaaaagttcaccagccaaaacttgcagggacctttat
actgcttatccagataaactttctggagaatattggattgatcctaatgaaggtgataca
agagatgcaattttagtgtattgtgatgctaagaaacgtgcaacatgcttattacccaat
cctgtacgttccccagaaattaactatattactgatcaaccagaaacttggttaagcgaa
atagaaaatggaatgaagattacatataaagcagatagtaatcaaattggctttttgcaa
cttctatcgagacatgcataccaaaatataatatatcactgtaaaaatagcataggctat
tttgattctgagcgaaagacgtataggaaaggtatgaaatttttaacctggaatgatgta
gaattaacaccacgtggaaatcaacgtctaagatatgaaatgataactgatgaatgtaga
acatataatggacaatggggtaaaacagtaatttcatatgaaactgataaacctgtaaga
ctacctataatagatgtggccttacgagatattggaaaaccagatcaaagcttttctatt
gaaattggtactgtttgttatgaataa
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integrated database retrieval system
