Bombus affinis (rusty patched bumble bee): 126914242
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Entry
126914242 CDS
T09368
Name
(RefSeq) zinc finger SWIM domain-containing protein 8 homolog
KO
K25207
zinc finger SWIM domain-containing protein 8
Organism
baff
Bombus affinis (rusty patched bumble bee)
Brite
KEGG Orthology (KO) [BR:
baff00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
baff04121
]
126914242
Ubiquitin system [BR:
baff04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul2 complex
Target recognizing subunit
126914242
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ZSWIM4-8_C
SWIM
Motif
Other DBs
NCBI-GeneID:
126914242
NCBI-ProteinID:
XP_050573844
LinkDB
All DBs
Position
3:8456944..8571097
Genome browser
AA seq
1839 aa
AA seq
DB search
MSLNTSDNLRLDMLHLCRACRFVRQLKLAGNLARSPVAVGGSGGGGGGSGSGGGGAGGNG
SSNSGNSGGGSGGGSRATEPAAASAVSVAVDNVAGQSSAPQIIEWEETDRYSFDDSDRFE
EDSLCSWSSEPESLCNNWRGWRRPTAGLGITKKFTEDGQTVPTLCELAARCVASHIPFEL
VEHVYPPVPEQLQLRIAFWSFPDNEEDIRLYSCLANGSADEFQRGEHFFRSRSVKDPLQI
GFHLSATVNSQGLLNGVRSQFNVAVTFDRRKITSCNCTCSSKAYWCAHVVAVCLHRIHMP
TQVCLRAPVSESLSRLHREQLQKFAQYLISELPQQILPTAQRLLDELLSVQPSTINSYCG
APDPTAGASAHDQTSWYLDEKTLHDNIKKILIKFCVPAPIVFSDVNYLSTTAPPAAAEWS
SLLRPLRGREPEGMWNLLSIVREMFKRTDRNAIPLLEIITEECMACEQILVWWFNTKVAL
LNGTGCGGKHNMNSNVHASQHACSSLCDEIVVLWRLAALNPGLSPAERDMLHGQFTAWHM
KIIDKVTKSRGSSVTHNSHNRNNGASHKDSLKNDLAVFTGFKSALEACYLDWEEYTLPGI
TYTAGSNPMYHCPFTCFRHAGDTKTEVNQVNSSAAVLNCQLPVSHHHGRRPLSLGLVEFS
YMDRRRLNPRECSGLCSRSGGGDGNRSSVSSEGFCENETDMPDIAEPQVVLVRRSCAQLN
NCGDTDSQEGGGSESSSNSNVSLKNAQNSDKHRSNASSETHSDSSDSSNNKAACDAKCSR
TNLDYREKSRTVLPKGNSSKSEQESDLEKDPSRRPSKDESSSSSSDSPSGDEYHVYYYDP
KAVVNGSSDKDSKNESQSTSTANASTVLGNLMKTEDPWDILFARAEGLYAHGHTREACIL
GVQLGEELLANPPNLMIDEPPAPVKGKKKKQQVNPASHQLTCLASATLAKCCFLCTVLAE
NPEYYNLAFRVGLFGLEMARLPANTKPLEVKLAHQESELVGLLKKIPLGPSELAMVRQRA
EQLRDGVLRSRGHALLPIMLASFIFDALNTSRVKHLSPDVDENLGFDAAVAALGLKANVS
EADHPLLCEGTRRQRGDLAITLLVHYKDDPTKVARIMDKLLDRDVHQLIKSPILSSYYTS
NPPTKSEMTRYLHDEECSSPLAGMDTGNGDSVVGTSSRPHSSTSAELETGMSAITVQTQI
VQQPVPARAKETRYKSKRVYPSIPNQPSEAGAHFMCELAKTVLTKAGGNSSTSLFTQAST
SQNHHGPHRALHMCAFQLGLYALGLHNCVTPNWLSRTYSSHVSWITGQAMEIGAPAISFL
IESWEGHLTPPEAVGIADKSSRGSDSNMVRAAAELALSCLPHAHALNPNEVQRAILQCKE
QSDLMLEKACITVENTAKGGGVYPEVLFQVAKYWYELYLRHIPGGEQQDDMPHDPLQLDL
NGVLLVEPGPPVDMSTAQMMPGPAQTVVVTSTQPPPQPYPTHPTITTLAPLGVGIPYAVS
PYSFVHPHHPIPTFGGPMPSHRVTLPPVPPHMYHAAFPPHPGHPQHPQHPQHPQHPQHPP
HPPHPQHPQHPHHPSQSAQPPSLPPYYTPQPPPLPGTHHLFTMQQPMPVNVQAGVTGPIP
GQNNMPGSALVQTQPIISTVRTQPQVHRQTQPFSQQQLRSLVAAYRVGMLALETLARRVH
DDRPQAKYARNPPYGEDVKWLLRVSKRLGTQYLHQLCVCTVNSIVSPFVLHDVALEAALF
LARNNRALVLQHLRSALLTPLVLKCQQMYIQCIHQKLYHLTAGEYEDFVNVVCAARAAFH
ITPEGHVQFKERLQSIKRSQSCTKELWAQINAALQQNSK
NT seq
5520 nt
NT seq
+upstream
nt +downstream
nt
atgtcactaaatacttcggataatttaagattagatatgcttcacctgtgtcgcgcgtgc
cgattcgtacgacaattaaaactggcaggcaatctggctcggtctcccgtggcggtgggt
ggtagcggcggtggcggtggaggcagtggaagcggcggaggaggggctggtggaaatggt
agcagcaacagcggcaacagtggcggcggatctggcggcggttctcgggcaacagagcct
gctgccgcttccgccgtatccgtggccgtggataatgtcgccggtcaatcgagtgcccct
cagataatcgaatgggaagagaccgatcgttactcctttgatgattctgaccgtttcgaa
gaggattccctgtgcagctggagcagcgaaccggaatcgttgtgtaataattggagggga
tggcggcgacctaccgctggtttaggcattaccaagaagtttacggaagatggacaaaca
gtgccgacgctgtgcgaacttgccgcgcgatgtgtcgcctctcacatcccgttcgaactg
gtggagcacgtttatccaccggttccagagcaattgcagctcaggatagcgttctggagt
ttcccggacaacgaggaggacatcagactctactcttgtttggcgaacggaagcgcggat
gaattccagcgtggagaacacttcttccggtcgaggagcgtcaaagatcctctacaaatc
gggttccacctgagcgccacagtgaattcacaggggttgttaaatggggtaagatcacag
ttcaatgtggctgtgacgttcgatcgacggaagatcacgtcgtgtaactgcacttgctcc
tctaaggcctattggtgcgctcatgtggtcgccgtgtgtcttcacaggatacacatgccg
acacaggtgtgcctgagagctccagttagcgaatccttgtcacgtttgcaccgggaacaa
ctgcaaaagttcgcgcaatatctcatcagcgagctaccacagcagattttgcccactgcc
caacgattgttagacgagctgctgtctgttcaaccgagtaccatcaacagttattgcggt
gccccggatcccacggcaggcgcctcagcccacgatcaaacgtcttggtatctcgatgag
aagacgctgcacgacaacatcaagaagatcctcatcaagttctgcgtgcccgctccgatt
gtcttcagcgatgttaattacctgagcaccactgcgcctcctgcagctgccgagtggtcc
tcgttgctgcgaccgttgcgtggtcgcgaaccggaaggcatgtggaacttgctgtcgatc
gtgcgcgagatgtttaagaggaccgatcgcaacgctataccattgttggagatcatcacc
gaggagtgtatggcatgcgagcagatcctcgtgtggtggttcaacacaaaggtagctttg
ttgaacggaaccggatgtggcggtaagcacaacatgaacagcaatgtgcacgcctcgcag
cacgcttgctcgtccctctgcgatgagattgtcgttctatggcgactggctgccttgaat
cctggattatcgcccgccgaacgagatatgcttcacggacagtttactgcttggcacatg
aagatcatcgacaaggtgacaaaaagtcggggcagttcggtgacgcacaattcacataac
agaaataatggcgctagtcacaaggattcattgaagaacgacctggctgtgttcactgga
tttaaatcggcgctcgaggcgtgctatctggattgggaggagtacaccttgcctggtatc
acgtacaccgccggaagcaatcccatgtatcattgtccattcacctgctttcggcatgct
ggcgatactaagaccgaggtgaaccaggtgaattcaagtgcagccgtgttaaactgtcaa
ctgcctgtttcccatcaccacggacgacgaccattgagtttaggcctggtagagtttagt
tatatggatagaagacggctgaacccgcgagagtgttcaggactatgttcacgaagtggt
ggcggtgatggaaaccgaagcagtgtcagctcagaaggtttctgcgagaatgagaccgac
atgcccgacattgccgagcctcaagtagttctcgttagaagatcttgcgctcaactaaat
aattgcggggatacagactcgcaggagggtggtggcagcgagtcgtcctcgaacagtaac
gtcagtctgaagaacgctcaaaattcggacaagcaccgctcaaatgcttcgtccgagacc
catagtgatagtagtgatagtagcaataacaaagctgcctgcgatgcgaagtgtagcagg
acgaatctcgactatcgggagaaatctcgaacggtgttgcctaaagggaatagttcgaag
agcgagcaggagtctgacctagaaaaggatccttccagaagaccttctaaggacgagagc
tcttcgtcgagtagcgacagcccgtctggtgacgagtatcatgtttattattatgatcct
aaagctgtggtgaatggctcttcggataaagactccaagaatgaatcacaatcaacgtcc
actgcaaacgcgagtacagtattgggcaatctaatgaaaacagaagatccatgggacatc
ctgttcgctagggctgagggactctacgctcacggccacacgagggaagcttgtattttg
ggtgttcaactcggcgaggaactattggctaatccaccaaatctcatgatcgatgaacct
ccggcgccggtgaaggggaaaaagaagaagcaacaagtaaacccggcgtcccatcagctc
acgtgccttgcgtccgccaccttggccaaatgttgtttcctgtgcacggtcctcgcggag
aacccggaatactacaacctagcgttcagagttggcttatttggtctcgagatggctaga
ctacctgctaacacgaaaccgttggaggttaaattggctcatcaggaaagcgagttagtt
ggattattaaagaaaatcccacttggtccatctgaattggcaatggttcggcaaagagcg
gaacaactgagagacggagtactaagatccagaggtcacgcgttgcttccaatcatgttg
gctagcttcatattcgacgcccttaacacgtcaagagtaaaacacctgtccccagacgtt
gacgagaaccttgggttcgacgcggccgttgctgctttgggcttgaaggcgaatgtgagc
gaagctgatcatcctcttctttgcgaaggaactagacgccagagaggagatttggccatc
acattgcttgttcactacaaggatgatcctacaaaggtagcaagaatcatggataagtta
ttggatcgagatgttcatcaattgattaaatcaccaatccttagtagctattatacatct
aatcctccaactaagagtgagatgacaagatatcttcatgatgaagagtgttcttctccc
cttgctggaatggatactggaaatggtgatagtgtcgttggtaccagtagcagaccgcat
agcagtaccagtgcagaattggaaactggtatgagtgcaatcacggttcagacgcagatc
gttcaacaacctgtgcctgcaagggctaaagaaacaagatacaaaagcaagagagtatat
ccatcaatccccaaccagccatcagaagcaggcgcacactttatgtgtgagttggcaaag
actgttctcacaaaagctggtggtaacagttccacctctttattcacgcaagcatccacg
agtcagaatcatcatggaccacacagagctctgcacatgtgcgcttttcaacttggtctc
tacgctcttgggcttcataactgcgtcactcctaactggctcagtcgtacctactccagt
catgtatcctggatcactggtcaagcgatggaaataggagcaccagcgatctcgttccta
atcgaaagttgggagggacatttaacgcctcctgaagctgttggtatagccgacaagtcg
tccagaggaagcgattctaatatggttcgagcagccgcagaactcgctctgtcttgctta
ccgcacgctcacgcgctcaatcctaacgaagtacagagagccattttgcagtgtaaggaa
caaagtgatctgatgttagagaaagcttgcatcacggtggagaacacagcaaagggaggc
ggtgtttatccagaagtactgtttcaagtggcaaaatattggtacgagctgtatctcagg
cacattcctggtggagaacagcaagatgatatgccacacgatcctcttcaattagatctt
aacggagtgcttctggtggaacctggtcctccagtggacatgagcactgcacaaatgatg
cctggaccagctcaaacggttgttgtgaccagcacacaacctcctccgcaaccatatcca
acacatccaactataaccacgctagcgcctttaggagttggtataccatatgcagtaagc
ccttacagttttgtgcatcctcaccatccaattccaacctttggtggaccgatgccatca
catagggtaactctaccaccagtaccaccacatatgtatcatgcggcatttccgcctcat
ccgggtcatccacagcatccgcaacatcctcaacatccgcaacatcctcagcatccacca
cacccgccacatcctcagcatccgcaacatcctcatcatccgtcacaatccgcgcaacca
ccatcgctgccgccatattacacgccgcaaccgccaccactaccgggaactcatcatttg
ttcaccatgcaacagcctatgccagttaatgttcaagctggagttacgggacctattccc
gggcagaacaacatgcctggatctgctctagttcagacacagcctataatatctaccgta
agaactcagcctcaggtccatagacaaactcagcccttcagtcagcagcagcttcgttct
ctagttgctgcataccgtgtgggaatgttagcattggaaactttagctcgtcgcgtacac
gacgacagacctcaggcaaaatacgcgcggaatccaccttatggagaagatgtaaaatgg
ttattgagagtgtcgaagcgtcttggcacgcaataccttcatcaactttgtgtttgtaca
gtgaacagcattgttagtcccttcgttcttcatgacgttgcattggaagcagcgctgttt
ttggctagaaacaaccgggctcttgtacttcaacatttgagatctgctcttttgactcct
cttgtccttaaatgtcaacaaatgtacattcaatgtatacatcagaagctataccacttg
acggcgggtgagtacgaagattttgtcaacgtagtgtgcgcggctagagcagcgtttcac
atcactccggagggccatgttcagttcaaggagcggcttcagtccattaaaagatctcaa
tcctgtaccaaagaactgtgggcacaaatcaacgcggcactacaacagaacagcaaatga
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integrated database retrieval system
