Bombus affinis (rusty patched bumble bee): 126915124
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Entry
126915124 CDS
T09368
Name
(RefSeq) TATA-binding protein-associated factor 172 isoform X1
KO
K15192
TATA-binding protein-associated factor [EC:5.6.2.-]
Organism
baff
Bombus affinis (rusty patched bumble bee)
Brite
KEGG Orthology (KO) [BR:
baff00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
baff03021
]
126915124
Transcription machinery [BR:
baff03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
126915124
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3535
SNF2-rel_dom
Helicase_C
HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
TPR_Trm732_C
HEAT_GCN1_C
ResIII
DEAD
HEAT_2
HEAT_ECM29
TPR_DNAAF5
HEAT_MROH2B_C
Ltn1_1st
Motif
Other DBs
NCBI-GeneID:
126915124
NCBI-ProteinID:
XP_050575509
LinkDB
All DBs
Position
1:5235386..5243785
Genome browser
AA seq
1899 aa
AA seq
DB search
MGSIRLDRLFILLETGTNAVTKRAAAQQLGEAQRLHPHDLHHLLARVSILLKSSQWDTRV
CAAQAVQAILAQVPAWDPQPIKKETCTEDEEAKRPNNKLNLEDFDMEKILARSSYLTGSE
GNEYDLTATDGDQMLLPNQKEKIAAKLGLHPQLMGVDTSELFTNEDLTPEVLPPTSNIQT
NVSVSETLRQPSGLSRREMNRARRKARQSVSKQRSREPDDHRNNEDYHNSNAQSPVNNEG
ESLNKRIKLEELISLEIGVNYNSQTESVNGVPDITGCWPDSVINWPLESFAESLCQDLFS
QKWEIRHGAATALRELVKLHGKGAGKSKNQTAEKMAESHYQWIIDAALRLLCVLGLDRFG
DFVSDQVVAPVRETCAQALGSLLLLVPNQKDDENKNRGITGILSVMLKLLEHDEWEARHG
ALLALKYLLAIRDDLLDDILPRVFPATMQGLSDPVDDVGAAAASALIPVASALPRLLKPS
ELEAIVIRLWELLREQDDLAAACNSFMKLLAAILSLPWARSYITPQPLSQVLPRLWPFLS
HSSSSVRKATLQTLQTLTEDDGAHNENKKERWGEGGGLVLQEALRHVFQRALIEHVIAIQ
DVAERVWENLVVQSDLELLLHAACPLVSTWLCLAMQPEHVPFNPNLLMITTPNKGAKNNQ
VSGTCDGQSDASNNGGNNTVGGNVKSISELKVYIGGIETVAPNIRKSNLIHARCRAARML
GLLSHYVVQPAPGVIYTPDILSPSLCYAKVLLAHLNSRSALQRTIVGLTMSHWATVNNMK
PPTIPDILRKRLLECLNEYVYYDEIATSFTRLLHDSRGYVATLKHYNLPVLIKVEPSGVM
TLDQIAILAGKPISKLCAMGNTTSYGGPSGSFSNSSNPIKLKPKLIESLEERRSAVKIGA
ADIAAQQLSYNVMSTAALAGAATMLHCLPPSPQPLNPLIKPLMEAIKREENEELQKLAAK
HLSYLVDLCVDRKPTPNAKISTNLCTFLCSDTEFTPRVNCNTNADLFDGILTLSNRQKHA
ERIAYNRGTNSGLSGGRGPGRPPTTEIPLEELLAYEEPEAKADRTRRRGATLALTAIATL
FGAQLPTRLPHLWELILPNVLREKDKITNRENIQEEVNQLIFGLQVLEVMAPSLHKALLP
PVLECLSFLCELLAHPYKAVRHMASRCIAVLATLDTEKIIMQVTNRVIPLLESTGGEKIY
SGTVTAPSEVDSMKQGAAEALACLVESLGVNIVPYAVLFMVPLLGRMSDQNQAVRLACSA
TFATLVQLLPLDPGAITDPPDLIEKKTQEWRFLEQLLNPRSIPDTVLPIPVSSELRSYQQ
QGLNWLNFLNRYRLHGVLCDDMGLGKTLQTLCILALDHHRNPHAPPSLVVCPPTLTGHWV
YEAEKFFKTKDLSVLQYVGTPPEREKLRPMVTYHKLIVASYEIIRKDIDYFETCQWNYCV
LDEGHIIKNGKTKSAKATKRLHANHRLILSGTPIQNDVLELWSLFDFLMPGFLGTEKQFA
AKYSRPILACREPKAGPKEQEAGALAMEALHRQVLPFLLRRNKEDVLKDLPPKITQDYYC
DLSSLQRTLYEDFHTRRSATLLSATSCTSTGNNGCSVFEALRYLRNVCNHPKLVLNQRHP
LYATVCNTLKQRKSTLSDIEYAAKLPALKQLLLDCGIGQPQRQQNRNSVTTDGTSDNQPP
QEQQLVSQHRALIFCQLKAMLDIVEKDLLCVHLPTVTYLRLDGSVQTTQRHSIVTRFNAD
PSIDVLLLTTQVGGLGLNLTGADTVIFVEHDWNPMKDLQAMDRAHRIGQKKVVNVYRLIT
RSTVEEKIMGLQKFKLLTANTVISTENASLETMATDQLLDLFSLDSGKEKKSEIQDDATS
KISEVPGISRSLLEILPELWEQQQYDDEYDIQSFLSTLK
NT seq
5700 nt
NT seq
+upstream
nt +downstream
nt
atgggttctattaggttagacaggctattcatactattggaaacagggacaaatgcagta
actaaaagagctgcagcacaacaattaggagaagcacagagattacatcctcatgattta
catcatttattggcaagagtttctatccttttaaagtcttcacaatgggataccagagtt
tgtgctgcacaagctgtacaagctatacttgctcaagttcctgcttgggatccacaaccc
attaagaaagaaacatgtacagaagatgaagaagcaaaaagaccaaacaataaattaaat
ttggaagattttgatatggaaaagattttagcacgtagttcatatcttactggatcagaa
ggcaatgaatatgatttaacagctactgatggggatcaaatgctacttcctaatcaaaag
gaaaaaattgctgctaaattgggccttcatccacaattaatgggggttgatacatcagaa
ttgtttactaacgaggaccttacaccagaagtattaccacctacgtcaaatatacaaact
aatgtatctgtgagtgaaacactaagacaacctagtggtcttagtagacgtgaaatgaat
agagctagacgtaaggcacgacagtcggtttcaaaacaacgttcacgagaacctgatgac
catcgtaacaacgaagattatcacaattcaaatgctcaatctcccgtcaataatgaaggg
gaatcactaaataaaagaataaaattagaggaactgatttcgttagagattggcgttaat
tataattcacagactgaatcagtcaatggagtaccagatattactggttgttggccagat
tctgtaataaattggcctctagaatcatttgcagaaagtctctgtcaagatctatttagt
caaaaatgggaaataaggcacggagcagcaactgccttacgtgaacttgtaaagcttcat
ggaaaaggtgcaggtaaatcgaagaatcaaactgcagagaaaatggcagaaagtcattat
cagtggattattgatgccgccctgcgactactatgtgttttaggattagatagatttgga
gattttgtttctgatcaagttgttgcgcccgtacgagaaacatgtgctcaagcactaggt
tctcttttattactagtgccaaatcaaaaagatgatgaaaataaaaataggggaattaca
ggaatactttcagtcatgctaaaactgttggagcatgatgaatgggaagcaagacatggt
gcgctacttgcactcaaatatttacttgctatacgagatgatctgttagacgacatactg
ccaagagtatttccagctactatgcaaggtctttccgatccagtcgatgatgtaggtgct
gcagcagcaagtgcgcttataccagtagcatctgctctaccacgtttgttaaaaccatca
gaattagaagcaattgtaattcgtctttgggaacttttacgtgaacaagatgatctagca
gcagcatgtaatagttttatgaaattacttgctgctatactttcattaccttgggcgcgc
tcttatattactcctcagccattatcgcaggtcttaccacgattatggccatttcttagt
cattctagttccagtgtacgtaaagccaccttacaaacattacaaacattaactgaagat
gatggtgctcataatgagaataaaaaagaacgatggggcgaaggaggtggacttgtattg
caagaggccctccgtcatgtttttcaacgagcgttaatagagcacgtaattgccatacaa
gatgtagctgaacgtgtttgggaaaatctagtcgtacaaagcgatctcgaacttttattg
catgcagcgtgtcctcttgttagcacatggctttgccttgcaatgcaaccggaacacgtg
ccatttaatccgaacttactcatgataaccactcctaataaaggagctaagaataatcaa
gtttctggtacttgcgacggacaatcagatgctagtaataacggaggaaataatactgtt
ggtggaaatgtaaaatccatatccgaattaaaagtttatattggtggaatcgaaactgta
gctccaaacataaggaaatcaaacttaattcatgctcgttgtagagctgcacgaatgtta
gggttgttatcgcattacgtagtacaaccagcaccaggtgttatttacacaccagatata
cttagtccttcactttgttacgctaaagtattactggcacatctgaattcgcgttcagca
ttacaacgcaccattgtaggtttgacgatgtctcattgggcgactgtaaataacatgaaa
ccacctactataccagatattttaaggaagagactattggagtgtttgaacgagtacgta
tactacgatgagatcgccacatcttttactcgtctgttacacgacagtcgcggttacgtt
gccactctcaaacattataacctgcctgttcttatcaaggtagaaccatcgggagtgatg
acgctcgaccaaattgcaatccttgctgggaaaccaatttcaaaactttgtgccatgggt
aatacgacaagctatggaggacctagtggaagttttagcaacagctctaacccgattaaa
ttaaagccaaagttgattgaaagtttagaagaaaggcggagtgctgtgaaaataggtgct
gctgatatagcagcacagcaactttcatataatgttatgtcaacagcagcactcgctggt
gctgcaacaatgttacattgtcttcctccatctccacaacctcttaacccattgataaaa
ccattaatggaagctattaaacgtgaagaaaatgaagaactacaaaaactggctgcaaag
catttgtcgtatttagttgatctctgtgtagatagaaaacctactcctaatgcaaagata
tcgaccaatttatgtacattcctatgctcggatactgaatttacacctcgtgtaaattgt
aatacaaacgcagatctatttgacggaattcttactttaagcaatagacagaaacatgct
gaaagaatagcttataatcggggaaccaacagcggacttagtggaggcagagggcctggc
cggccaccaacaactgaaattcctttagaagaactacttgcttatgaagaacctgaagct
aaagctgatagaacacgtcgtcgcggagctactttagcacttactgccatagctactcta
tttggtgcacaattacctacacgtttgccgcatctttgggaactaatattaccaaacgta
ttacgagaaaaagacaaaatcactaatcgtgaaaatattcaagaagaagtaaatcagtta
atttttggtttacaagttttagaagttatggctcccagtcttcataaagccttactgcct
cctgtcctagaatgcctttcattcttatgtgaattattggctcatccttacaaagctgtc
agacacatggcatccagatgtatagctgtattagctacattagatacagagaagataata
atgcaggttacaaaccgtgtaataccacttctagaatcaactggtggagagaaaatatac
tcaggaactgtaacagcaccaagcgaagtagattcaatgaaacaaggcgcagccgaagcg
ttagcgtgtcttgtcgaaagtttaggtgttaatatcgttccatatgctgtgctctttatg
gttccattgcttgggcgtatgagtgatcaaaatcaggctgtaagattagcttgtagtgct
acattcgcaacactcgtgcaacttttgccccttgatcctggtgcgattacggatccacca
gatttaatagaaaagaaaacacaagagtggcggttcttagaacaacttttgaatccacgc
agtatcccagataccgtattaccgattccagtatcttcagagttacgttcttatcaacaa
caaggcttaaattggttaaatttcttgaatcgttatcgacttcatggtgttttatgcgat
gacatgggccttggaaaaactttacaaactctttgtatactagctttagatcatcatcgt
aatcctcatgctccaccaagcttggtagtgtgtccgccaactctaactggtcattgggtg
tatgaggcagaaaagttcttcaaaaccaaagatctctcagtgttacaatatgttggcacc
ccacctgagcgtgaaaaattacgtccaatggttacttatcacaaactcatcgttgcaagt
tatgaaataatccgtaaggatatcgattatttcgaaacttgtcaatggaactactgtgtg
ctcgacgaaggtcacattattaaaaatggaaagacaaaaagtgctaaggcaactaaacga
ttgcatgcgaatcacagacttatactttcgggaacaccaatacaaaacgatgtacttgaa
ttatggtctttgtttgactttttaatgccaggtttcctaggtactgagaaacaatttgcg
gcaaagtactcacgtcctatactagcctgtagggaaccaaaagctggcccaaaagaacaa
gaggcgggagctttagcaatggaagcacttcatagacaagttttaccattcttacttaga
cgaaataaagaagatgtcctcaaagatttaccaccaaaaattacacaagactattattgc
gacttatcgtcattacaacgtacgctatatgaagatttccatactcgacgttctgccact
ttattatccgctacgtcgtgcacttcaactggaaataatggttgtagtgtctttgaagca
ttgcgatatctgcgtaatgtttgtaatcatcccaaattagtattaaatcaacgacatccg
ttatacgcaactgtatgtaatacattgaagcaacgaaagagcacattatccgacatagaa
tatgcagccaagttacctgcattaaaacaattattattagattgtggcataggacagcca
cagcgacaacaaaaccgcaattctgtaactactgatggtacatcagataatcaaccaccg
caggagcaacagttagtgagccaacatcgagctttaattttttgtcaattgaaagcaatg
ctagatatcgtggaaaaagatcttctttgtgtacatttacctactgttacatatcttcgt
ctcgatggaagtgtacaaaccacgcaaaggcattccatagtaacacgttttaacgcagac
ccgtcgatagacgtgcttctattaacgactcaagtcggtggtcttggattgaatctaact
ggtgctgacactgttatattcgtggaacatgattggaatcctatgaaggatcttcaagcg
atggatcgagcacatcgtattggtcaaaagaaagtagtaaacgtatacaggttaatcaca
agatcgacagtagaggaaaagatcatgggactgcagaaattcaaacttctcacagcaaat
accgtaatttcaacagagaatgcatctctggaaacaatggcaactgatcagttacttgac
ttgttttcactggacagtggcaaagagaaaaaatcagaaatacaggatgatgccacatct
aaaattagtgaggttccaggcattagccgttcccttttagaaattcttcctgaactatgg
gaacaacaacaatatgacgatgaatatgacattcagtcatttctatctactttaaagtga
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