Bombus affinis (rusty patched bumble bee): 126915322
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Entry
126915322 CDS
T09368
Name
(RefSeq) ATP-dependent RNA helicase me31b
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
baff
Bombus affinis (rusty patched bumble bee)
Pathway
baff03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
baff00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
126915322
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
baff03019
]
126915322
03036 Chromosome and associated proteins [BR:
baff03036
]
126915322
Enzymes [BR:
baff01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
126915322
Messenger RNA biogenesis [BR:
baff03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
126915322
mRNA degradation factors
5'-3' decay
Decapping complex
126915322
Chromosome and associated proteins [BR:
baff03036
]
Eukaryotic type
Gene silencing
piRNA pathway
126915322
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Motif
Other DBs
NCBI-GeneID:
126915322
NCBI-ProteinID:
XP_050575858
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All DBs
Position
4:2911916..2920300
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AA seq
444 aa
AA seq
DB search
MMTETHINSNHVLNSGLNTKSEIDKMDDVGWKAKLKIPPKDKRIKTSDVTDTRGNEFEEF
CLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDILARAKNGTGKTGAYSIPVLEQVDPR
KDVIQALVLVPTRELALQTSQICIELAKHMDIKVMVTTGGTDLRDDIMRIYQTVQVIIAT
PGRILDLMDKNVANMDHCKTLVLDEADKLLSQDFKGMLDHVISRLPHERQILLYSATFPL
TVKQFMEKHLRDPYEINLMEELTLKGVTQYYAFVQERQKVHCLNTLFSKLQITQSIIFCN
STQRVELLAKKITDLGYCCYYIHAKMAQAHRNRVFHDFRAGLCRNLVSSDLFTRGIDVQA
VNVVINFDFPKMAETYLHRIGRSGRFGHLGIAINLITYEDRFNLHRIEQELGTEIKPIPK
VIDPSLYVARPEDNNSMEEGNVSK
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
atgatgacagaaacacatataaattccaatcatgtcctaaattctggtttgaataccaaa
tcagaaatagacaaaatggacgatgtgggttggaaagccaaattaaaaattccaccaaag
gacaaacgaattaaaactagtgatgttactgatactcgtggcaatgaatttgaggagttt
tgcctaaaacgagaattattaatgggcatctttgaaaaaggttgggaaaagccttcccca
attcaagaagccagtattcctattgcattatctggtaaagatatcttggctcgtgcgaaa
aatgggactggtaaaactggggcctattcaattccagtgctagaacaggttgatccacga
aaagatgtgattcaggcattagtacttgtacccactagagagttagctcttcagacatcg
caaatttgcattgaactggcaaaacatatggacataaaagtaatggtaactactggagga
acagacttacgggatgacattatgaggatttaccagacagtacaagtaataatagcaacg
ccaggaagaattcttgaccttatggacaagaatgttgcaaatatggatcattgtaaaact
ctagttttggatgaagcagataaactactgtcacaagattttaaagggatgttggatcat
gtcatttccagattaccacatgaacgtcaaatactgctgtattcagctacatttcccctg
acagtgaaacaattcatggaaaaacacttaagagatccatatgagattaatttaatggaa
gaactcacattgaaaggtgtaacacaatattacgcctttgtacaagaacgacaaaaagtt
cattgtcttaatacactgttctccaagttgcaaataacacaaagcataatattctgcaat
tcaacacaacgtgttgaattactcgcaaaaaagataacagatcttggatattgctgttac
tacatacacgcgaaaatggcgcaggcacaccgaaatcgcgtgttccatgattttcgagca
ggactatgcagaaacttggtgagcagtgatctgtttactcgtggtattgatgtacaagct
gtgaacgtcgttatcaattttgactttccaaaaatggcagagacataccttcatcgtatc
ggccgatcaggacgattcggtcacttaggtatagcaattaacctaatcacgtacgaagac
cgttttaacttacatcgtatcgaacaagagcttggaacagagattaaacctattccaaag
gtaatagatccaagtttgtatgtagcaagaccagaagacaataatagcatggaagagggt
aatgtgtctaagtag
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