Bombus affinis (rusty patched bumble bee): 126915509
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Entry
126915509 CDS
T09368
Name
(RefSeq) probable ATP-dependent RNA helicase ddx42 isoform X1
KO
K13131
ATP-dependent RNA helicase DDX20 [EC:
5.6.2.7
]
Organism
baff
Bombus affinis (rusty patched bumble bee)
Brite
KEGG Orthology (KO) [BR:
baff00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
baff03041
]
126915509
Enzymes [BR:
baff01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
126915509
Spliceosome [BR:
baff03041
]
Other splicing related proteins
Proteins involved in snRNP biogenesis
SMN complex factors
126915509
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
AAA_30
SPA
Motif
Other DBs
NCBI-GeneID:
126915509
NCBI-ProteinID:
XP_050576201
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All DBs
Position
1:3485063..3490798
Genome browser
AA seq
1241 aa
AA seq
DB search
MPLVIHKILTEKIEKMSHIIAHDIDKKPRTKDIKVQEDITFYQMGFSQKILDGLSLCGFQ
RPSPIQLKAIPLGRCGFDLIVRAKSGTGKTLVFCIISLEMIDIDISSVQVLVLAPTREIA
VQIAQVFSSVACEIEGLKVEVFIGGTAIESDKKKLNNCHIAVGAPGRIRHLIDKEFLKVE
NVRLFILDEADKLMETSFQKDINYIFSKLPLRKQVIASSATYPGDLEIFLQAYMCSPVLA
SPDNNEPILVGLTQFITVVPSHPNVMKQVQIKVDELIKIFNKIPFKQSLVFSNYQSRAQS
VCNKISAMGFKATFFAGNQDMNKRLEAINKLKTFKCKIMVTTDLTARGIDADNVNLVVNL
DLPIDAPTYLHRIGRAGRYGSYGLSITIIAENELETLQKLLMSIGGPNFYVLKLPFDYPD
DIWNTSNTKFEKLYAKSEKDENQFDIKPITTAINDLSMNTANIEVQNNIESKVNETTDNI
NKEVIENVEEVKNNIMDFSCLRNMPNLQNKIKVNSLFVPCINLIDESQCIKKKKKETTIM
SYSVSKPKIIHSFTLNAAINNSSSWQKYNENVVFEVDLSDLQEDDLSNSNIDMIIEFTKY
NFQSKNAEKSSFHHNYVNIDVHSEDTISRSTVHNEMQKQDLEQKIQKKSDVTADTLITIS
NNIQNKTDVSILEELNSHLTEYMKSSNTFCDELCSNNEEILLKQAFIWKNKLDFEIKLLN
NVMEVMKESIQKFIYQKHVEMLKIFYRVQKKALLCVYPEIRNDDEVNDTYLYFRTSVDEN
VLELYKEIENFKSSHRKCGENFNAYFPYPVELDSYMPNLMISNTDREDYLNALRYLYSNP
YPREHLLQIASFVTFIDEPKKYDLIQKLKSLNNSSVNELLTVIQSELSKKESNKNESKEQ
EDKLLEHFDSTNRGENVINSKVDILHKTLDNIGNMTSQEENVSLSDNKCDKMSNNYSFDN
SISTDLGLDDLFKIQKVARHENCNLTSSTSSIFSSESDTVKEHRLNGKVNTKNKFRRRKK
IQKQGDNTAKEQFIIRSSDSTDTYEKQYTSQTQSDLSSRSMTDRLNSSFVETNLSRKNSQ
NIQDIFNCQESYVDNEPQSSVSIPRISEHRKNNSCNFFPTPLTKNVSQRHLDNEVTTEKT
NICNLHQQKSKNPVNSQYYAPFYNYMPNVPYNQVEDYMYMPGHLSRNIFSENIYHFPHSS
SDNLNEVEIDQFLSSLREETNRLHLELYKSEMLRNAMKNYN
NT seq
3726 nt
NT seq
+upstream
nt +downstream
nt
atgcctctagtaatacataaaatattaacagagaaaatagagaaaatgtctcatattatt
gcacatgatattgacaaaaagccacggacaaaggatattaaagtacaagaagatattaca
ttttatcaaatgggattttcccaaaaaattttggatggattatctctttgtggtttccaa
agaccttcacccatacaattaaaagcaattcctttaggaagatgtggttttgacttaata
gtacgtgccaaatcaggaactggtaaaactttagtgttttgtataatatcacttgaaatg
attgatatagatatatcgtctgtacaagtattagtattagcacctactagagaaattgct
gtacaaattgcacaagttttttcatctgtagcttgtgaaatagaaggtttaaaagttgaa
gtatttataggaggaacagctatagaaagtgataaaaagaaattgaataattgtcacata
gctgttggtgctccaggtagaattagacatttaattgataaagaattcttaaaagttgaa
aatgttagattatttattcttgatgaagcagacaaattaatggaaaccagttttcagaaa
gacattaattatatcttttcaaaattaccactaaggaaacaagttatagcatcaagtgcc
acttatccgggagatttggaaatatttttacaggcatatatgtgctctcctgttttagca
tctccagataacaatgaaccaatacttgttggactcacgcagttcataacagttgttcct
tctcatccaaatgttatgaaacaggttcaaataaaagtagacgaattaataaagatattt
aacaaaattccattcaaacaaagtttagttttttcgaattatcaatcaagagcccaatct
gtgtgtaacaaaattagtgctatgggttttaaagcaaccttttttgctggaaatcaagat
atgaataaaagacttgaggccattaataaattaaagacttttaaatgtaaaataatggta
acaactgatttaactgcaagaggtatagatgcagataatgtaaatttagttgtaaacctt
gatttacccatagatgcaccaacatatttgcatagaataggaagagctggacgttatgga
tcttatggtctatctataacaataattgcagaaaatgagttagaaacattacaaaaatta
ttaatgtccattggaggtccaaatttttatgtattgaaacttccttttgattatccagat
gatatttggaatacttctaatacaaaatttgagaaactttacgcaaaatctgaaaaagac
gaaaatcaatttgacattaaacctatcactacagctattaatgatttatctatgaatact
gctaatatagaagtacagaataatatagagtcaaaagttaatgaaacaacagataatata
aataaagaagttatagaaaatgtggaagaagtaaaaaataatataatggatttttcctgt
ttaagaaacatgcctaatttacaaaataaaataaaagttaattctttgtttgtaccatgt
attaatctgatagatgaatctcaatgcattaaaaagaagaagaaagagactacaatcatg
tcgtacagtgtgtctaagcccaaaattatacatagttttacattgaatgccgcaatcaat
aattcttccagctggcagaaatacaatgaaaatgtggtatttgaagttgatttatcagat
ttacaagaagatgatttatcaaattctaatattgatatgattattgaattcacaaaatat
aattttcaaagtaaaaatgcagaaaaatcttcttttcatcataattacgtgaatattgat
gtacattctgaagataccatttctagaagtactgtacataatgaaatgcagaaacaagac
ctagaacagaaaattcagaaaaagagtgatgtaactgctgatactctgataactatctca
aataatattcaaaataagacagatgtttccattttagaagaattgaattctcatctcaca
gaatatatgaaaagttctaatacattttgtgatgaattatgttcaaacaacgaggaaata
ttattgaaacaggcatttatttggaaaaacaaacttgattttgaaattaaattattaaat
aatgtaatggaagtcatgaaagaatctatacaaaagttcatatatcagaaacacgttgaa
atgctgaaaatattttatagagtacaaaagaaagctctcttatgtgtttatccagaaata
cgaaatgacgatgaagtaaatgatacttatttatattttagaacttctgtagacgaaaat
gtactagaactatataaagaaatagaaaatttcaaaagttcccatcggaaatgtggagaa
aattttaatgcatattttccatatcctgttgaattagattcatatatgccaaatcttatg
atctccaacacagacagagaagattatctcaatgcattacgatatttatattcaaatcct
tatcctagggaacatttattgcaaatagcaagttttgtgacattcattgatgagcctaaa
aagtatgatttaatacaaaaattaaaaagtttaaacaactcttcagttaatgaattgtta
acagtaatacaaagtgaattatctaagaaggaatcaaataaaaatgaaagtaaagaacag
gaagacaaattattagaacattttgatagtacaaatcgaggtgaaaacgttattaattca
aaggttgatattttacataagacactagataatattggaaatatgactagtcaagaagag
aacgtctctctaagtgataataaatgcgataaaatgagtaataactatagttttgacaat
tctatatcaactgatttaggtttggatgatctttttaaaatacaaaaagttgcacgtcat
gaaaattgtaacttgactagtagtacatcaagtatattttctagtgaaagtgataccgtt
aaggaacatagattgaatggaaaagtaaatacgaaaaataaatttcgtagacggaaaaag
attcagaaacaaggagataatactgctaaagaacaatttattatcagatcatctgatagt
actgatacgtatgaaaaacaatatacgtcacaaacgcaatcagatttgtcatctagatca
atgacagatcggttaaattcgtcttttgtagaaacaaatttaagcagaaaaaatagtcag
aatattcaagatatatttaattgtcaagagtcttacgtagataatgaaccacaaagttct
gtttctattcctagaattagtgaacatcgaaagaataattcatgtaatttttttcctaca
cctttaacaaaaaatgtttcacagagacatttagataatgaagttacaactgagaaaacc
aatatttgtaatttacatcaacaaaaatcaaagaatcctgtaaattcacaatattacgct
cctttttataattatatgcctaatgttccttataatcaagtagaagattatatgtatatg
ccaggacatttgtccaggaatatattttcagagaatatatatcattttcctcattcatca
agtgataaccttaatgaagttgaaattgaccaatttttatcatcattaagagaggaaaca
aatcgattgcatttagaactttataaatcagaaatgctccgtaacgcaatgaaaaattat
aattaa
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