Bombus affinis (rusty patched bumble bee): 126915884
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Entry
126915884 CDS
T09368
Name
(RefSeq) 3'-5' RNA helicase YTHDC2-like isoform X1
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
baff
Bombus affinis (rusty patched bumble bee)
Brite
KEGG Orthology (KO) [BR:
baff00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
baff03041
]
126915884
Enzymes [BR:
baff01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
126915884
Spliceosome [BR:
baff03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
126915884
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HA2_C
OB_NTP_bind
R3H
Helicase_C
DEAD
nSTAND3
Ank_2
HA2_N
Ank
AAA_22
AAA_19
Ank_5
ATPase
PhoH
Cas_TM1802
Flavi_DEAD
NPHP3_N
Ank_3
NACHT
Motif
Other DBs
NCBI-GeneID:
126915884
NCBI-ProteinID:
XP_050576967
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All DBs
Position
4:5031715..5036440
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AA seq
1157 aa
AA seq
DB search
MPRRNRSKKAPLIGEDTRIAVNLTLKKLLETHDQKELEFPSSYTAEERAYIHKLAHELGL
KSKSRGKGTNRFLTVYKREGSTIVQADAVIKLQKASRQSIYNLLQAFPLNHKECQDLLPP
IERERPPNTDVSVNTNTKAMGRLNNSVPQIPQLKTNFDVLNYRKALPIFSFREDILDALN
TNQVVIIGGETGSGKTTQVPQFILEHCQQRQQPCRIICTQPRRLSAVSVAERVAFERDEK
IGQTFGYQIRLESRVAPKTLLTYCTNGVLLRTLMAGDSALSTVTHVIMDEVHERDRFCDF
LLIALKDAIQKHKSLKLVLMSATLDVNIFVKYFNKCAVVNVLGRSYDVDTYFLEDVLKMT
GYMTKEMLSERKEFMDKKDQHKMLETWTQYKPQQSGSNTMNERCILPAPILAQQNEPVPE
KIKLEPWLAEEMDKSISEAWLCGGEDKFAQLLYFILSENVSVDYQHSATFVTPLMIAAGK
GCINTTEQLLNLGANLNLRAANEWTALDWAKNMNQAECAELIEAYMKTYDCTLQDETKVH
VKDVSLSEEDKFLLDVYQHTFNDDKINYDLLLQLILHIHLKMPPGSLLIFLPGYDDIVTM
REKINNEEKEMNKGLRYNLYVLHSNMQTCDQKKVFKPSPAGSRKIILSTNIAETSITVDD
VVYVIDPGKVKEKSFDALSGVCTLRSNWISQACAKQRKGRAGRCRKGICYRLFSSVRYSN
MEPYQTPEILRSPLQELCLYTKHLAPGNTPIAEFLDRALEPPSNVITRNAVQLLKTIDAL
DPWEDLTELGSHLLDLPVEPRLGKMLLYAVVLKCLDPVLTIVCSLAYKDPFVLPLQPSQK
RAATAARKRFATNTYSDHMAVLRAFQGWQNARASGKERTFCEQNFISAAVMEMIVGMRTQ
LLGQLRASGFVRARGPGDIRDLNSNSENWAVVKAALTAGLYPNLIRLDREHLQLRTQKEV
KVFFHPSSTLRDCPKSPRMTSTQTYAANVEALPCDWLLYEEMSRTGRFCHVKMVTLINPI
TVALFCGPSRLSVDVIYEAESVPESESDSEVDESNEGTIFKLDDWVVFKLDPETARFFLH
LRQKWNALFLRRMKTPNKAMSQLDEKVVSTLVSVITNEEQTCGLQQPSGIGQRPRPLIVD
YYPANVRRTDDFVERNI
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atgccacgcagaaaccgcagtaagaaagcccctcttattggggaggatactagaattgca
gtaaatttaacgcttaaaaaattattggaaactcatgatcaaaaagaattagaatttcca
tcttcgtatactgcggaagaaagagcctatattcataaattagcacatgaacttggatta
aaatctaaaagtagaggtaaaggtacaaatcgctttttaactgtgtacaaaagagaagga
tcaacaatagttcaagctgatgctgtaataaaattacaaaaagcatcaagacaaagtata
tataatttattacaggcttttccactaaaccataaagaatgtcaggatttgttaccaccg
attgaacgagaacggcctcctaatacagatgtttcagtaaatacaaatacaaaagcaatg
ggtcgattaaataacagcgtgcctcaaataccacaattgaaaactaattttgatgtatta
aattatcgtaaagcactcccaatatttagctttcgggaagatatccttgatgcattaaat
acgaatcaggtagtcataataggaggggaaacaggtagtggtaaaactacccaagttcct
caatttattctagaacattgccaacaaaggcaacaaccttgtagaattatttgcactcaa
ccaaggagattgtcagctgtttcagtggctgaaagagtagcatttgaaagagatgaaaaa
attggtcaaacgttcggttatcaaataaggcttgaaagtagagttgccccaaaaactctt
ttaacatactgtacaaatggtgttctccttagaactcttatggcaggagattctgcttta
agtactgtcacacatgttatcatggatgaagttcacgaacgcgataggttttgcgatttt
cttttaatagcattaaaagatgcaatacaaaagcataaatctcttaaacttgtgcttatg
agcgccacattggatgttaacatttttgttaaatattttaacaaatgtgcagttgtaaat
gtcttgggaagatcatatgatgtcgatacgtattttctagaagatgttctaaaaatgacg
ggttatatgacgaaagaaatgctttcagagagaaaagagtttatggataaaaaagatcaa
cataaaatgttagaaacttggactcaatataaacctcaacaatcaggatcaaatactatg
aatgaaagatgtatattgcctgctccaattttagcacaacagaatgagccagttcctgaa
aaaataaaattagaaccgtggctagccgaagaaatggataaaagtatttctgaagcatgg
ttatgcggaggcgaagataaatttgcacaacttttatatttcatactttccgaaaatgtt
tcggtagattatcaacattccgcgacattcgtaactccgcttatgattgccgcaggaaaa
ggatgtataaataccacagaacagcttttaaatttaggtgcaaatttaaacctacgagca
gccaatgaatggactgcattagattgggcaaagaatatgaatcaagctgaatgtgccgag
ttaatagaagcatatatgaaaacttatgattgtacactacaggatgaaacaaaagtacat
gttaaagatgtttcactttcggaagaagataaatttttattagatgtatatcaacataca
tttaatgatgataaaatcaattatgatctcctcttacaattaattttgcacatccactta
aagatgcctcctggttctcttttaatatttttaccaggatatgatgatatcgtaactatg
agagaaaagataaataatgaagaaaaggaaatgaataagggtttacgctataatttgtat
gtacttcattcaaatatgcaaacatgtgatcaaaaaaaagtatttaagccaagtcccgcg
ggatctcggaaaattattctttcaacaaatatcgctgaaacaagtatcacagttgatgat
gttgtatatgttattgatccaggaaaagttaaagaaaaatcgttcgatgcattatcggga
gtgtgtacacttagatccaattggatttcccaagcttgtgcaaaacaacgtaaaggtaga
gcagggagatgtagaaaagggatttgttataggctattttcttcggttcgatatagtaac
atggagccttatcaaactccagaaatcttaagatcaccactacaagaactgtgtttgtac
acaaaacatttagctccaggaaatacacctatcgcagaatttttagatcgagcattggaa
ccaccctctaatgtaataacaagaaatgcagttcaattattgaagactatcgacgcatta
gatccatgggaagatctcactgaattaggaagtcatttgcttgatttaccagttgaacca
agacttggaaaaatgttattgtatgctgtggttttaaaatgcttagatcctgtcttgact
attgtatgtagtttagcatataaagatcccttcgtattacccctgcaaccatcacaaaag
agagctgcaactgcggctcgtaagagatttgcgactaatacatattccgatcatatggca
gttttacgtgctttccaagggtggcagaatgcacgtgcaagtggcaaagaacgcacattt
tgcgaacaaaattttatttcggctgctgtaatggagatgatagttggaatgcgtacacaa
ctgcttggtcagcttcgtgcatctggatttgttagagcaagagggccaggagacattaga
gacttgaattctaattctgaaaattgggccgtagtgaaagcagctctgactgctggttta
tatccgaacctaataaggctagacagagagcatttgcaactaagaacacagaaagaagtg
aaagtattttttcatccatcatcaactttaagagattgtccaaaatcaccaaggatgaca
tccactcaaacatatgcagctaatgtagaagctttgccctgtgattggttactttatgaa
gaaatgagtcgtacaggacgattttgtcatgttaaaatggttactttgatcaatccaata
acagtagctttgttctgtggaccatcaagattgtccgtagacgtaatttatgaagctgag
tccgtaccagagagtgaatcagattctgaagttgatgaaagtaatgaaggaacgattttt
aaactcgacgattgggtagtatttaaactcgatccagaaactgctagattctttttacat
ttaagacagaaatggaatgcgttgttcttgagacgtatgaaaacgccgaataaagcaatg
tcgcaacttgacgaaaaggtagtgagcactttagtaagtgtaattacaaatgaagaacag
acatgtggattacaacaaccatctggtattggtcaaagaccacgccctttaattgttgat
tattatcctgccaatgttaggagaacagatgactttgtagagaggaatatttaa
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