KEGG   Bombus affinis (rusty patched bumble bee): 126916007
Entry
126916007         CDS       T09368                                 
Name
(RefSeq) THO complex subunit 6 homolog
  KO
K13175  THO complex subunit 6
Organism
baff  Bombus affinis (rusty patched bumble bee)
Pathway
baff03013  Nucleocytoplasmic transport
baff03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:baff00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    126916007
  09122 Translation
   03013 Nucleocytoplasmic transport
    126916007
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:baff03019]
    126916007
   03041 Spliceosome [BR:baff03041]
    126916007
Messenger RNA biogenesis [BR:baff03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     126916007
Spliceosome [BR:baff03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    126916007
SSDB
Motif
Pfam: Beta-prop_IFT122_1st WD40 WD40_Prp19 Beta-prop_THOC3 WD40_WDHD1_1st Beta-prop_WDR5 Beta-prop_WDR3_1st WD40_CDC20-Fz Beta-prop_EML_2 WDR55 Beta-prop_TEP1_2nd Beta-prop_WDR3_2nd Beta-prop_NOL10_N Beta-prop_WDR36-Utp21_1st Beta-prop_WDR41 NBCH_WD40 ANAPC4_WD40 Beta-prop_WDR36-Utp21_2nd WD40_Gbeta DSE1_N Beta-prop_EML WD40_MABP1-WDR62_2nd Beta-prop_WDR75_1st Beta-prop_ACSF4 CFAP251_N Beta-prop_CAF1B_HIR1 EIF3I Beta-prop_SCAP Beta-prop_RIG_2nd Beta-prop_TEP1_C Nucleoporin_N Beta-prop_Vps41 WDR54 Beta-prop_IFT140_1st Beta-prop_EIPR1 WDR90_beta-prop_4th UCP007778 WD40_like Cyto_heme_lyase Beta-prop_IFT140_2nd
Other DBs
NCBI-GeneID: 126916007
NCBI-ProteinID: XP_050577299
LinkDB
Position
5:complement(13802176..13803840)
AA seq 332 aa
MMSDTINQKLFYNTVLSQAFSPDGNYLLAGNIYGDISVFELLKALGPHKVEENELQGPSY
HFTAHPDQQVESMVSTDNFLVTGTSGEICGWDWKIVTSSKAPKSKVSWTIQLPVNKDSYE
KPDVNYLVYSKSNNILYAGCGDNNIYVITLEDGRILRSLEGHTDYIHCLSLMGNQLASCG
EDGTVRLWDLRKRENTNILTPHLVDKVARPRFGKWIGAIDFTEDWLLCGGGPSLSLWHMR
TMEAATVFELPDEGIHVANIYEERVIAAGTAPHVYHLTYQGEMLAKVPTSSNTVYSIVYQ
ENPQKVFSIAGSSNNIDVCTNFNYRELMLKFA
NT seq 999 nt   +upstreamnt  +downstreamnt
atgatgtcggatacaattaatcaaaaattattttataacactgtattgtcacaagctttc
tccccggatggaaattatttattagctggaaatatttacggagatatttcagttttcgag
ttattgaaagctctaggaccgcataaagtcgaagaaaatgaattacaaggccccagttat
catttcactgcacatcccgatcaacaagtggaaagtatggtttcaacagacaatttctta
gtaacaggaacatcaggagaaatatgtggatgggattggaaaatagttacttcgagtaaa
gctccaaaaagcaaagtatcatggaccatacaacttccagttaataaggacagttacgaa
aaaccagatgtaaattatttagtatattcaaaatcaaataacattctgtatgctggttgt
ggtgataataatatttatgtaattactctagaagatggtagaatattaagaagcttagaa
ggacatacagactatattcattgcctatccttaatgggtaatcaattagcttcatgcggc
gaagatggaacagtaaggttgtgggatttacgaaaaagagaaaacaccaatatattaact
ccacatttagtagacaaagttgccagaccaagatttggaaaatggattggcgccatagac
ttcacggaagattggctgctatgtggtggtggtccaagtttatctttatggcatatgcgt
acgatggaagcagctactgtgttcgagcttccggacgaaggcatccacgtggcaaacatc
tacgaagagcgtgtaatagctgctggaacggcacctcacgtttaccatctaacttatcaa
ggagaaatgttagctaaagtaccaacttccagcaataccgtatatagtattgtatatcag
gaaaatccacaaaaagtgttcagcatagccggttcctcgaacaacatagacgtctgtacg
aactttaattaccgcgagttaatgttaaagtttgcttaa

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