Bombus affinis (rusty patched bumble bee): 126916015
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Entry
126916015 CDS
T09368
Name
(RefSeq) protein HBS1 isoform X1
KO
K14416
elongation factor 1 alpha-like protein
Organism
baff
Bombus affinis (rusty patched bumble bee)
Pathway
baff03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
baff00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
126916015
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
baff03019
]
126916015
Messenger RNA biogenesis [BR:
baff03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
126916015
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
GTP_EFTU_D2
HBS1_N
MMR_HSR1
AAA_22
Motif
Other DBs
NCBI-GeneID:
126916015
NCBI-ProteinID:
XP_050577323
LinkDB
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Position
1:complement(2326219..2330671)
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AA seq
722 aa
AA seq
DB search
MSRHRDVRCMNYSEEYEGYDDVYGHSVEDDYCVSPSAEQFLFDRSKQQNIASFITEPDII
EDNEDNEELPISFNDENVTLTDIELGKLMSCMETIKNVIGDTVPESEIKKKIIQSNFDVK
IALDLILKESSPKTATGSSMANRDNLEPHPDAASVKPQSNSFIIPKLSFNKQENIEGKKL
SSKYTFQATTPSNVKIIPAGKRSVVKGFNISGTENTDLLNSRVESPRSESPYSDYNSPEV
KRKENIVSKEKRAASSNANSPRCQSPLSGHQTPDLDLKLKFNEEKDVTKIYKDKRGDSKE
QLHLIVVGHVDAGKSTLLGRLLCELGEVPTRLIHKYQQESKKIGKQSFAYAWVLDETGEE
RERGITMDVGHSKFETETKCITLLDAPGHKDFIPNMIIGATQADVALLVVDATRGEFETG
FDSGGQTREHALLLRSLGISQLTVVINKLDTVDWSKERFDEIVSKMSVFLKQAGFKDNVT
FVPCSGLSGENILKKPKEPLSNWYTGPTLVNVINNFKCPERHIDKPFRFSVNDIFKGTGS
GFCVSGHVETGMVALGDKVLVLPRNETAVIKGLQIDEVSITNAFAGDQVSLILSGIDQQN
VGIGDIICNPQNPVPVTTRFQAHVVVFAVKIPIMKGLPVIIHQQSLVQPAVITKLVAQLH
RSTGEMIKKKPRCLPKNSSAIIEITTQNSVCMELYKDIKQLGRIMLRVEGTTIAAGLITK
IK
NT seq
2169 nt
NT seq
+upstream
nt +downstream
nt
atgtctcgtcatcgcgatgtacgatgcatgaattattcagaagaatacgaaggttacgat
gatgtttatgggcattctgtagaagatgactactgtgtatctcctagtgctgaacaattt
ttatttgatcgaagtaagcaacaaaatattgcgtcgtttattacggaaccagatataata
gaagacaacgaagataatgaggaacttccaatatctttcaacgatgaaaatgtaacactt
acagacatcgaattgggcaagctcatgtcatgcatggaaactataaaaaatgttatagga
gacacagtacctgagtctgagatcaaaaagaaaattattcaatcaaattttgatgttaaa
atagcacttgatttaatattaaaagaatcttctccaaaaactgctactggttcatctatg
gctaatagggataatttagaaccacatccagatgctgcatctgttaagcctcaatctaac
tcattcattatacccaaattatcatttaacaaacaagagaatattgaaggtaaaaaattg
tcatccaaatatacatttcaagctacaacaccttccaatgtgaaaattattcccgctgga
aaacgatctgttgtaaaaggctttaatataagcgggactgaaaatactgatctattgaat
tcccgtgttgagagtcctcgctctgaaagcccatattctgattataatagtccagaagta
aaaagaaaggaaaatatagtctcaaaggaaaaaagagcagcttcctcgaacgcaaatagc
ccgcgatgccagtccccattgtcaggacatcagacgcctgacttggatcttaaactaaaa
ttcaatgaagaaaaagatgttacaaaaatctataaagataaaagaggagacagcaaagaa
caattacatttaattgtggttggtcatgtagatgctggtaaaagtactttattaggacga
cttttatgcgagttaggagaagttccaacaagattaattcacaaatatcaacaagaaagt
aaaaaaatagggaaacaatcatttgcttatgcatgggtccttgatgaaacaggggaagaa
agggaacgtggaataactatggatgttggtcattctaaatttgaaacagaaacaaaatgt
attactttattagatgcacctgggcataaggacttcatacctaatatgatcattggtgct
actcaagctgatgtagctttgttagtagtagatgctactagaggagaatttgaaactggt
tttgacagtggaggtcaaactagagaacatgctctattattacgttcattaggtatatca
cagttgacagtagtaataaataaattagatacagtagactggtcaaaggagagatttgat
gaaatagtaagcaaaatgagtgtattcttgaaacaagctgggttcaaggataatgttact
tttgttccttgtagtggtctatctggtgaaaatatattaaaaaagcctaaagaaccttta
tctaattggtatacaggacctacattagtcaacgttattaataatttcaagtgtcctgaa
cgccatatagataaaccatttcgattttcggttaacgatatatttaaaggcacaggatct
ggattctgcgtgtctggtcatgtagaaacaggcatggtagctttaggtgataaagtttta
gtattaccgcgaaatgaaactgcagtgattaaaggtttacaaatagatgaagtatctata
acaaacgcatttgctggagatcaagtttctttaatattatctggaattgatcaacaaaac
gttgggattggagatattatttgtaatcctcaaaatccagttcctgtaacaacacgtttc
caagcacatgttgttgtatttgcagtgaaaatacctattatgaaaggtcttcctgtaata
attcatcaacaatctttagttcaaccagcggttattacaaaattagtagcgcaacttcat
aggagtactggtgaaatgataaaaaagaaaccacgctgtttaccaaaaaattcaagtgct
attattgagattacaacacaaaattcagtttgtatggaattatataaggacatcaaacaa
ctgggtagaattatgttacgtgtagaaggaactactattgcagctggtctaattacaaaa
attaaataa
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