Bombus affinis (rusty patched bumble bee): 126916065
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Entry
126916065 CDS
T09368
Name
(RefSeq) pre-mRNA-splicing factor syf1 homolog
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
baff
Bombus affinis (rusty patched bumble bee)
Pathway
baff03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
baff00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
126916065
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
baff03019
]
126916065
03041 Spliceosome [BR:
baff03041
]
126916065
Messenger RNA biogenesis [BR:
baff03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
126916065
Spliceosome [BR:
baff03041
]
Complex B
Other components
Prp19-related factors
126916065
Complex C
126916065
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_2
TPR_15
TPR_8
TPR_12
ARM_TT21_C
TPR_10
RPN7
DHR-2_Lobe_A
PPR
4HB_MCP_1
ARM_TT21_4th
Microp_apicomplexa_6
Motif
Other DBs
NCBI-GeneID:
126916065
NCBI-ProteinID:
XP_050577385
LinkDB
All DBs
Position
5:complement(8998473..9003533)
Genome browser
AA seq
839 aa
AA seq
DB search
MLKRKDPEGNLYVFNEEDLPYEEEILRNPYSVKHWQRYIDHLKSTKSSNLNIVYERALKE
LPGSYKLWYNYLRQRVNQLKGRCITDPLYEDVNNAFERALVFMHKMPRIWMDYCTLMTEQ
CYITRTRQVFDRALRALPITQHHRIWPLYIEFLKKHNVYETAVRVFRRYLKLAPEDTEEY
IEYLISIGRLDEAAVKLAQIVNQDDFVSKHGKSNHQLWNELCDLISKNPSKIKSLNVDAI
IRGGLRRYTDQLGPLWNSLADYYVRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFE
ELSLSKRMEEAAKNPTEDDDIDLELRLARFEHLMERRLLLLNSVLLRQNPHNVQEWHKRV
RLYEGQPHEIINTYTEAVQTVQPQLAVGKLHTLWVEFGKFYEENGQIADARVVFEKATHV
PYTKVDDLASVWCEWAEMEIRHGNYKEALKLMHRATAMPFRKVAYHDETETVQMRLYKSL
KVWSMYADLEESFGTFKTCKAVYDKIIDLKIATPQIIINYGLFLEENRYFEEAFRAYEKG
IALFKWPNVYDIWNTYLTKFLKRYGGTKLERTRDLFEQCLEFCPPKYAKALYLLYAKLEE
EHGLARHAMSVYERATNAVLPEEKFEMFNIYIKKAADIYGVPKTRQIYEKAIEVLNEDNT
REMCLRFAEMETKLGEVDRARAIYAHCSQICDPRVASNFWQIWKEFEVRHGNEDTMREML
RIKRSVQAMYNTQVNMMSAQMLNNTSNSLSDIPADAMRLLDSKTQDNITTYKDSIKFVRG
TIEKDGKAESQVNNPDEIDIDIDDVDDTEADVEEDIPVEKQTIPSQVFGSLKTTDGEDD
NT seq
2520 nt
NT seq
+upstream
nt +downstream
nt
atgttgaaacgtaaagatccagaaggaaatctatatgtttttaatgaagaagatttacca
tacgaagaagaaattttgagaaatccttattctgtgaaacattggcaacgttatatagat
catttaaaaagtacaaaaagcagtaatttaaacattgtgtacgaacgagcgttaaaggaa
cttcctggaagctataagttatggtacaattatctacgtcaacgtgtcaaccaattgaaa
ggaaggtgtataacagatccgctttacgaagatgtaaataatgcatttgagcgtgctttg
gtttttatgcataaaatgcccagaatttggatggactattgcacattgatgacagaacaa
tgttatattacgcgtactcgtcaagtttttgatcgggcacttagagctctccctatcacg
caacatcatcgtatatggccattgtatattgaatttttaaaaaagcataatgtgtatgaa
actgcagtcagagtttttagaaggtatcttaagctagctccagaagatacagaagagtat
atagaatacctgatatcaatcgggaggcttgacgaagctgctgtgaaacttgcacaaatt
gttaatcaggatgattttgtatcaaaacatggaaagtctaatcatcaattatggaatgaa
ttgtgtgatttaatatcaaagaatccttctaaaataaaatctcttaatgtagatgcaatt
attagaggcggtttaagacgttatactgatcagttaggacctctttggaattctttggcg
gattattatgttcgtagcggtttattcgaaagggcgagggatatttatgaagaagcaata
caaacagtgactactgttagagactttactcaagtgtttgatgcttatgcacaatttgaa
gaacttagtcttagcaaacgtatggaagaagctgcaaaaaatcctactgaagatgatgat
atagatctagaattgagattagcacgatttgaacatttaatggaaaggcgtttattactt
ctgaattctgtattgctcagacaaaatcctcataatgtacaagaatggcataaaagagtt
aggctttatgagggacaaccacacgagattattaatacatatacagaagctgtacagact
gtacaaccacaattagcagtaggtaaattgcatactttgtgggttgaatttggtaaattt
tatgaagaaaatggtcaaatagcagacgctagagtagttttcgagaaagcaactcatgtt
ccctatactaaagtcgatgatcttgcttctgtatggtgtgaatgggcagaaatggaaatt
aggcatggaaattataaagaagcgttaaaacttatgcatcgtgctactgctatgccattc
cgtaaggtagcttaccacgacgagacagaaacagttcaaatgagattgtataaatcttta
aaagtttggtctatgtatgccgatttagaagaaagttttgggactttcaagacatgcaaa
gctgtgtacgacaaaattatagatctaaaaatcgcaacgccgcaaatcattattaattat
ggactcttccttgaagaaaatagatattttgaagaagcttttagagcttatgaaaaaggt
attgcactcttcaaatggcctaacgtttacgatatatggaatacgtatcttacaaaattt
ttaaaacgttatggtggaacaaagttagaacgaacgcgagatttatttgaacagtgttta
gaattttgtccaccaaaatatgctaaagccttgtatttactgtatgcaaaattagaagag
gaacatggtttggctaggcatgcaatgtctgtatatgaacgagcaactaacgctgttctt
cctgaagaaaaatttgagatgtttaacatatatattaaaaaagcagcagacatatatggt
gtcccaaaaacgaggcaaatatatgaaaaagctatcgaagtacttaatgaagataataca
agagaaatgtgtttacggttcgcagaaatggagacgaaattaggagaagttgacagagct
cgggcaatatatgcgcactgcagtcaaatttgtgatccaagggtggcttcaaatttctgg
caaatatggaaagagtttgaagtgagacatggtaatgaagacactatgcgtgaaatgctt
cgaattaagcgtagtgtacaagctatgtacaacactcaagtgaatatgatgtctgcacaa
atgttaaataatacatcaaactcactatctgatataccagcagatgcaatgcgtcttttg
gatagtaaaacacaggataatattaccacatataaggacagtattaaatttgttcgtggt
acaatagaaaaagatggtaaagcagaatctcaagtaaacaatccagatgaaatagatatt
gatattgatgacgttgatgacactgaagcggatgtagaggaagacatacctgttgagaaa
caaactattccatcacaagtatttggtagtttaaagacaactgatggtgaagatgattaa
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