Bombus affinis (rusty patched bumble bee): 126916281
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Entry
126916281 CDS
T09368
Name
(RefSeq) uncharacterized protein LOC126916281
KO
K03679
exosome complex component RRP4
Organism
baff
Bombus affinis (rusty patched bumble bee)
Pathway
baff03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
baff00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
126916281
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
baff03019
]
126916281
Messenger RNA biogenesis [BR:
baff03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
126916281
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
126916281
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRP4_S1
Isochorismatase
EF-hand_1
KH_6
ECR1_N
EF-hand_7
EF-hand_6
EF-hand_5
EF-hand_8
EF-hand_4
Motif
Other DBs
NCBI-GeneID:
126916281
NCBI-ProteinID:
XP_050577887
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All DBs
Position
5:17498458..17501241
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AA seq
622 aa
AA seq
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MMEEYPPINVRLAVNRVDLNIIKNEDVQPRIYTPGEEISSQPDFLRGHGTYVDDENTLRA
SVAGVLEKVNKLISIRPLKARYQGEIGDVVVGRITEVQQRRWKVDTNSKLDSVLLLSSVN
LPGGELRRRSAEDEQTMRRYLQEGDLICAEVQSTFVDGSLSLHTRVLKYGKLSQGIMLKV
SPALIKRKKTHFHNLANGASLILGNNGYIWIGASKKDTDRSEGGFTQDLSRIPQANREVC
ARLRNCILILAQCNIQLTDTSVTYAYEESMRYKVNQLLEPERSHQRNMDACFTAFDKDGD
GYLSITEFEFICRALFRNDRGKIYNVDENQLKEMYSIFDLNGDGKIDREEFEICWNRWIK
TCTRPKSAFLIVDVQNDFITGSLNIKQCAAQHDGSEVIEPINRLLEIVQFDAVFYSLDWH
PMDHVSFIDNLHLRDVDPSSGISKEAAQVYDTITFRGPPLLKQRLWPRHCIQDSWGAELH
KDLKIVDNAIKIYKGTNPEVDSYSVFWDNKKMMETSLSSQLQEKGATDIYICGLAYDVCV
GATAVDALTNGYRTILIDDCSRGVDLVDIEKTKATVIADNGVIVNSSQVKAMVEGKDRRP
ELGYKLALEIKRKLNFVDDDNQ
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atgatggaagaatatccacctattaatgtacgtttggcagtaaatagagtcgatttaaat
ataataaagaacgaagacgtacaacctcgaatatatacaccaggagaggagatttctagt
cagcctgacttcttaagaggacatggaacatacgtggatgatgaaaacacattacgcgca
tctgtagctggcgttttagaaaaagtaaataaacttatttcaataagacctttgaaagca
cgttatcagggtgaaataggagatgtagttgttggtcgtataaccgaggtacaacagagg
cgatggaaagtcgacacaaattccaaacttgattctgtattattgctgtctagtgttaat
ttacctggtggtgaattgaggagaagatctgcggaagatgaacaaactatgagaagatat
ctccaggaaggagatttaatttgtgcagaagtacaaagtacttttgtagatggttcgctc
tcgttgcacactagggtcttaaagtatggtaaattgtctcagggtataatgttgaaagta
tcaccggctcttataaaaagaaagaaaactcattttcataatttggcaaatggtgcaagt
ctgatattaggaaataatggttatatatggattggagctagtaagaaagatactgataga
tcagaaggtggtttcacgcaggatttgtcaaggattcctcaagcgaaccgcgaagtttgt
gcaagattgcgtaattgtattttaatcttagcacaatgtaatatccaacttacagataca
tctgttacatacgcttatgaagaatctatgagatataaagtaaatcaattgctggaacca
gagaggtcacatcaaaggaacatggatgcatgttttactgcatttgataaagatggagac
ggatatttgtcgattacggaatttgaattcatttgtcgtgcactatttcgtaatgatcgt
gggaaaatttataacgttgatgaaaatcaattgaaggaaatgtattctatatttgacttg
aacggagatggaaaaattgacagagaagaatttgagatatgctggaatcgatggattaaa
acatgcactcgtccaaaaagcgcctttttaattgtggatgtacaaaacgatttcataaca
ggttctctaaatattaagcaatgtgctgcccagcatgatggttcagaagtaattgaacca
attaatcgtttattagaaattgtacaatttgatgcagtgttttattctcttgattggcac
cctatggatcacgtatcttttattgataatttacatctaagagatgttgaccctagtagc
ggaatctcaaaagaagcagcacaagtttatgatactataacattcagaggtccaccattg
ttaaagcaacgtctttggccgcgtcattgcattcaagactcttggggtgctgaacttcat
aaagatctgaaaatcgtagacaatgcaattaaaatatacaaaggaactaatccagaagta
gactcatattccgttttttgggataataaaaagatgatggaaacaagcctatcttcacaa
ttacaagaaaagggcgcgacagacatatatatctgtggattagcctatgatgtttgcgtc
ggggctactgcagtagatgcacttacaaacggttatcggactattctcatcgatgactgt
agtcgaggagtagaccttgttgacattgaaaaaactaaagctactgttatagctgataat
ggcgtaattgtaaattcaagtcaagtgaaagcaatggtcgaaggaaaagatcgccgacca
gaacttggatataaattagctttagaaattaaacgaaaattgaattttgtagatgatgat
aatcaataa
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