Bombus affinis (rusty patched bumble bee): 126916335
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Entry
126916335 CDS
T09368
Name
(RefSeq) replication factor C subunit 1
KO
K10754
replication factor C subunit 1
Organism
baff
Bombus affinis (rusty patched bumble bee)
Pathway
baff03030
DNA replication
baff03410
Base excision repair
baff03420
Nucleotide excision repair
baff03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
baff00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
126916335
03410 Base excision repair
126916335
03420 Nucleotide excision repair
126916335
03430 Mismatch repair
126916335
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
baff03032
]
126916335
03400 DNA repair and recombination proteins [BR:
baff03400
]
126916335
DNA replication proteins [BR:
baff03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
126916335
DNA repair and recombination proteins [BR:
baff03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
126916335
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
AAA
BRCT
BRCT_2
Rad17
AAA_22
AAA_14
AAA_30
RuvB_N
RNA_helicase
PTCB-BRCT
AAA_19
AAA_33
NTPase_1
AAA_5
AAA_7
AAA_16
AAA_assoc_2
AAA_11
Motif
Other DBs
NCBI-GeneID:
126916335
NCBI-ProteinID:
XP_050577991
LinkDB
All DBs
Position
5:9246228..9254985
Genome browser
AA seq
1051 aa
AA seq
DB search
MPRDIRSYFQTIKTNSNVAPAKATKKRIIISSDEDEDKSQSPRKRPKKTKLLEKKTIKSD
SNEDIKIISPADMFGKNPVNRQEASKISRQSLKQKAEEVPKISKKLQKKEAEGHNDDDFE
ATLRQLDTSDIEQRYLTEIKVNEDTNLHESNIENKEKTPIKNKEDVKKKTRPDKTNQEKS
NKEHEPKSKKHSNNISDEDIKHKGSESSSKFKHTKKSFKTSSAISKMEVEYLKEKKETSP
KKIDTSDVYEEKIEKKKQNAAMYQQYLQRGGARNPGSKEIPVGAEQCLTGLSFVITGVLD
SLEREEAEELIKQYGGRILHQISKKTDYVIVGDQAGPAKLSKATNLNIKKISEDDLLELI
RTRPAGQNDNATQPRTKSKERSKRKSAESSEESTPKKKKITANEETKKAAKVHSPHKSES
SKKEIEDSLKQELYNKDEKIKSSIEKKQNEHKESLVQDKKEIIDVKDIKIQTNTLQDISG
NTPVQALVEKYRPKTMKQILGQQGDKSNAKKIYAWLMNWHKNQSSQVKHTRPSPWAKDDN
GAFFKAALLSGPPGIGKTTTVQVVCNELGFDLIEFNASDTRSKKLLQEEVSELLSNTTIK
NYFKDVKSKPSSKHVLLMDEVDGMAGNEDRGGLQELINLIKSTDIPIVCICNDRNNPKMR
TLSNYTFDLRFPKPRLEQIRGAMKSMCFKENIQISNEDLDRLIESTNQDIRQVINHLALF
VGQTGSQEKNEKKHINKDLRLGPWDVVKKVFSIEEHKHMSISDKSSLFFHDYNIAPLFVQ
ENYLMVIPQVSKNELLGRVAESAESIALGDVVEKSIRSNNAWSLLPIQAYYSSVIPGTAM
SGHIGGQINFPAWLGRNSKTGKLNRLMQEITLHTRLATGASKEAINLDYIKPLRNTILRP
LAVGGIENVDAAIDVMNHYHLLREDLDSLVEISLWPGDRDPFQIIDSKVKAAFTRAYNKT
SVALPYIVSGTSKKKVTSSIQEEGFLEEEEEEIDSDQNDDNLDADKMIKAKKAGTNKNTE
SKGKNTDKTEKKGKNSSDKSNKRGRGRGKAK
NT seq
3156 nt
NT seq
+upstream
nt +downstream
nt
atgccaagggatatacgatcctattttcaaactattaaaacaaattccaatgtcgctcca
gcgaaagctaccaaaaaacgaattattatttcgtctgacgaagatgaggacaaatcccaa
tcgccacgtaaacggcccaagaagacaaagttattggagaagaaaactattaaatctgat
tccaatgaagatattaaaatcatttctcctgctgatatgtttggtaaaaatccagtaaac
agacaagaagcatctaagatatctagacagtcattaaagcagaaagctgaagaagtacct
aagatatctaaaaaattacaaaagaaggaggctgaaggtcataatgatgatgattttgaa
gctaccttacgtcagttagatacatctgatattgagcaaagatatttaacagagattaaa
gttaatgaagatacaaatttacatgaaagcaatattgaaaataaagaaaagacacccatt
aaaaataaagaggatgttaaaaagaaaacaagacctgataaaacaaatcaagaaaagagt
aataaagaacatgaaccaaagagtaaaaaacattctaataatatttcagacgaggacatt
aagcataagggttctgaaagtagtagcaaatttaaacatacaaagaaatcttttaaaact
tcatctgccatttctaagatggaagtagaatatctgaaagaaaaaaaggaaacttctccc
aaaaagatagacacttctgatgtatatgaggaaaagattgaaaagaaaaaacaaaatgct
gcaatgtatcagcaatatcttcaaagaggaggagccagaaatccaggctcaaaagaaatc
cctgttggtgctgaacagtgtctaacaggattaagttttgtaataactggcgttttggat
tctttagaaagagaagaagctgaagaacttattaaacaatatggtggacgaattttacac
caaatttcaaagaagactgactatgttatagtaggtgaccaagctggtcctgcaaaactg
tcaaaggctaccaacttaaatataaaaaaaatatcagaagatgatttgcttgagttgata
cgtacaaggcctgcaggtcaaaatgataatgcaacacaacctcgtacaaaatcaaaagaa
agatcaaagagaaaatctgcagagtctagtgaagagtcgacaccaaagaaaaaaaaaatt
actgcaaacgaggaaacgaaaaaagcagcaaaagtacactcaccacataaaagcgaaagt
agtaaaaaagaaattgaggactcattgaaacaagaactttataataaggatgaaaaaata
aaatcttcaattgaaaagaaacagaatgaacataaagaatcgcttgtacaggataaaaaa
gagataattgatgtgaaagatataaaaatacaaacaaatactttgcaagatataagtggg
aacacaccagtgcaggcattggttgaaaaatataggccaaaaactatgaaacaaattttg
gggcaacaaggggacaaaagtaatgctaagaaaatatacgcttggttaatgaattggcat
aaaaatcaaagtagtcaagtgaaacatacaagacctagtccttgggcaaaagatgataat
ggagcttttttcaaagctgctttgttatctggtcctcctggaattgggaaaaccacaact
gtccaagttgtctgtaatgaattaggttttgatcttatagaatttaatgcatcagatacc
agaagcaaaaagcttctgcaagaggaagtatcagaacttttatctaataccacaataaaa
aattattttaaagatgttaaaagcaaaccatcatcgaaacacgtattgttaatggatgaa
gtagatggaatggctggtaacgaggatcgcggtggtctacaggaattaattaatttaatc
aaatcaactgatatacctattgtttgtatttgcaatgatcgaaataatcctaaaatgaga
acgctttctaattatacatttgaccttcgatttccaaaacctagattggaacaaattagg
ggtgcaatgaaatctatgtgttttaaagaaaatattcaaatttcgaatgaagatctcgat
cgtctaattgaatcaactaatcaggatattcgtcaagttataaatcatttggcattattt
gttggacaaactggttctcaggaaaaaaatgaaaagaaacatataaataaggatttgaga
ctaggtccttgggatgttgtgaaaaaagtattttccatagaagaacataaacatatgagt
ataagtgacaagagtagcttatttttccatgattacaatatagcaccattatttgtacaa
gaaaattacttgatggttatacctcaagtgtcaaaaaatgaattgttaggaagggtagca
gaaagtgctgaaagtatagcattaggagatgtagttgaaaaatccataagaagtaataat
gcttggtctcttttaccaatacaagcttattattcttctgtaatacctggaacagcaatg
tctggtcacattggtggccaaattaattttccagcttggcttggacgtaattcaaaaact
ggtaaacttaatcgcttaatgcaggaaatcactttacatacacgtttggctacgggtgcg
agtaaggaggctataaacttggactatattaaacctcttagaaatactattctcagacct
ttagcagttggaggtattgaaaatgtagatgcagcaattgatgttatgaaccactatcat
ttactcagggaagatctagattcattggtagaaatttctctatggcctggtgatcgtgat
ccgtttcaaattatagatagtaaggtaaaagctgcttttacaagagcatataataaaact
tctgtggctctaccttatatagtgagtggaacatcaaagaaaaaagtaacatcaagtata
caagaagaaggtttcttagaagaggaggaagaagaaattgactctgatcaaaatgacgat
aaccttgatgcagataagatgattaaggcaaagaaagctggtacaaacaagaatactgaa
tcaaagggtaaaaatactgataaaactgagaagaaaggcaaaaatagtagtgataagtct
aataaacgtggaagaggacgggggaaagcaaaataa
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