Bombus affinis (rusty patched bumble bee): 126916390
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Entry
126916390 CDS
T09368
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7-like
KO
K14409
protein SMG7
Organism
baff
Bombus affinis (rusty patched bumble bee)
Pathway
baff03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
baff00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
126916390
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
baff03019
]
126916390
Messenger RNA biogenesis [BR:
baff03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
126916390
mRNA cycle factors
Common to processing body (P body) and stress granule
126916390
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
Motif
Other DBs
NCBI-GeneID:
126916390
NCBI-ProteinID:
XP_050578122
LinkDB
All DBs
Position
5:11363347..11368968
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AA seq
1157 aa
AA seq
DB search
MGLNAAVQALKKAEPLKDKVQQCRDLLNDSDAWVCQQQLQKIYQQVLILDLEYALDRKVE
QELWNLGFKNYIATLQSQAKDRKNPKRGESQALLSWCLEAASGFYLTLLQEICTAFDLDL
PFRRKGYIYGCTSPWKAIEKLSVPHKSSCFYACQYCLVHLGDIARYRNESKQAELFYRHA
VSLSPSSGQPYNQLALLEASRGNKLATVFHYTRSVAVKHPFPVATTNLAKTLSSALNDTS
LNIDGKTKLSSQEYVAVFLKLHGVIHNLGDLKVASTYAKLLTETLTALVATESFSSWMLV
QMFVINLYALEHTTSVVMGNNEPLRHEQLTSDEKIARDCILDLIAGSLSALLLPVYTIKN
SIIEYFALPSIKLCLDWIHTKPTVLEELAFTSRLQIWPSLCVLLNALQNCVADFAYDQYI
KVPLPEDRDLQGFLPLEKSFECLKFTSTDLEDNVEASNKLRAVRILRLGHCLAQYRINGT
ALIAITLGEEKGDNRFSSMSEGNGLSNELMKELEELSLNKGRQSAVSTSPVLSESASSKG
STDVDMLEHALDKKIGILKPQGSLERSKDTVLITSTESSTFETNVQPTTRKPRQNIAMQT
IMRRAETEQKQVTFKNLSPLNVEEESEKKFKLSGASVSPVKGVPPGGNKNISVVGEISKV
NNVSNVIANTPITVQSRLPLMPSATSTVQSQIITTQNQVKTTKLQHAVSASQSSQINHLS
VKEQQASGIPTPISGISQCVGTICYQNPTFNVQNPQFTKNYVTNHVGNLSSYPIQGHFTS
SVQQSIQSQSIGLQYTSNQNRSMHQRTQTHNIPQNTLLHQNLGILSSAQPSNVIPNASQN
INSQQSRNIGVQQNRSLNTQQNHNLNVQQQNVMKTSLRPSTISLHNQGTLPNSTIANVST
LSTLNTYQKKLHHAAPIIPNTSNVPSNSLNSTTTPNFQYNFNQNDFNQNAFGQVPQKQLS
SVYNKNSDVLEFSLPNHLGMSKNQSQSTTNYPLFQNYETTNFNLWKDTQQSQHSIPCWGS
TSRSMQLHSEDTSVIENYHNWEDSSNPGNIMSQIPLRTSNSYPSDSQQTKHFGTGSNFES
SRSLEVDSKSNQSISTGNTYSLFSSNNAWGSNVQSCNVSNQDQTKTRLNQQSLWFGPGPS
PLERLLEQQKSLREGGT
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atgggcctaaacgcagctgtacaagctttaaagaaagcagagcctttaaaggacaaagta
caacagtgcagagatcttctaaatgatagtgacgcgtgggtatgccagcaacagctacag
aagatatatcaacaagttctgatattggatttggaatatgctttggaccgcaaagttgag
caggaactttggaatttaggatttaaaaattatatagcaactttacaatcccaggcaaag
gatagaaaaaatcctaaacgtggagaatctcaagctttacttagctggtgcttggaagct
gctagtggtttttatttgacattattacaagaaatttgtactgcatttgatctagattta
ccatttagaaggaagggttacatttatggatgtacatcaccatggaaagctattgaaaag
ttatcagtgcctcataaatcttcatgtttttatgcgtgccaatattgccttgtgcattta
ggggatattgctcgttatagaaatgaaagtaaacaagcggagttattctataggcatgct
gtatcattgtcaccatccagtggacaaccatacaatcaattagcccttcttgaagcatcg
cgcggtaataaattggcaactgtttttcattacacacggtctgtagctgtaaaacatcct
tttcccgttgccacaacgaacttggcaaaaacattatcgtccgctttgaacgatacgtcg
ctgaatatagatggaaaaacgaaattatcttctcaagaatatgtagcagtttttttgaaa
cttcatggcgttatccacaatcttggcgacttaaaagttgcttcaacatatgcgaaatta
ttaactgagacattgacagccttagttgccacagaaagttttagctcttggatgcttgtt
caaatgtttgtgattaacttgtatgccttggaacatacaacgagtgttgtcatgggtaat
aatgaaccgctaagacacgaacaattaacatccgacgaaaagattgctcgtgattgtatt
ttggatctcatagctggaagcctgtctgctttattgttacctgtttatacaatcaaaaat
tctattattgagtattttgctttgccttctataaaactgtgccttgattggattcataca
aaacccacagttttagaggaactagcttttacatcgagacttcaaatttggcccagctta
tgcgtattgttgaacgctttgcaaaactgtgtggccgatttcgcatatgatcaatatatt
aaggtaccactgccagaggatcgtgacctacaaggattcttaccattggagaaaagtttc
gaatgtttaaaatttacgagtaccgatttagaagataatgtcgaggcttccaataaactg
cgtgcagttcgtattcttcgtttaggtcattgtttagcacagtataggatcaatggtact
gcgttaattgctattacattaggagaagaaaagggtgataacaggttcagttctatgagt
gaaggaaacggtttgagtaatgaattgatgaaagaattagaagaactcagtttaaataaa
ggaagacagtctgctgtatcaactagtccagttctctcagagtctgccagcagtaaaggt
tctaccgacgtcgatatgttggaacatgccttagataagaaaataggtatcttgaagcct
caaggttcgttagagcgaagtaaagacacggttttgatcacctctacggaatctagtact
tttgaaactaatgtccaacctactacaagaaaaccaaggcaaaacatagcgatgcaaacg
ataatgcgacgtgctgaaactgaacaaaaacaggttacgtttaaaaatttgtctccatta
aatgtagaagaggagagtgaaaaaaaatttaaattgagtggagcatcagtgagtccagta
aaaggtgtccctccaggtgggaataaaaatatatcggttgttggagaaatatcaaaggtg
aacaatgtttcaaacgtgattgcgaatacaccaatcaccgttcaaagtcgattaccgttg
atgccttctgctacatctactgtgcaaagccaaatcattaccacgcaaaatcaagtaaag
actacaaaattacagcacgctgtttcagcatcacaatcttctcaaattaaccatctttct
gtaaaagaacaacaagcgtccgggattccgactccaatatctggaatatctcaatgtgta
gggactatttgttatcaaaatccaacatttaatgttcagaatccacaatttacgaaaaat
tatgtcacgaatcatgttggaaatctatcgagttatccgattcaaggacattttactagt
tcagtacaacaatcgatacaatcacagagtataggtttacaatatacatccaatcaaaat
aggtctatgcatcagagaacacagactcataacatacctcagaatacattgttgcatcaa
aatcttggaatactgtcttcagctcaaccgagtaatgttataccaaatgcttcacaaaat
attaattcccaacaaagtagaaatattggtgtgcagcaaaatcgtagtttgaatactcaa
cagaaccacaacttgaatgtgcaacaacagaatgttatgaaaactagtcttagaccaagc
acaatatctttacataatcaaggtacattacctaattcaactattgcaaatgtttctact
ttgtcaacattaaatacatatcaaaagaaacttcatcacgctgctcctattataccgaat
acatcaaatgtaccaagcaattcactaaattcgacaactacgcccaattttcagtataat
tttaatcagaatgattttaatcagaatgcctttggtcaagtaccacaaaagcaattgtca
tccgtgtacaataagaattcggatgttttggaattttcgttaccaaatcatttaggtatg
tcaaaaaatcaatctcagtccacaactaattatccgcttttccaaaactatgaaaccaca
aatttcaatctgtggaaagacactcaacagtcacaacattctataccttgctggggttca
actagcagaagtatgcaattacatagtgaagatacgtctgtcattgaaaattatcataat
tgggaagactcctctaatcctggaaacataatgtcacaaattccattgagaacttcgaat
agttatccatcagattctcaacaaaccaagcattttggtactggaagtaattttgaaagt
tctagatctttagaggtagacagcaaatcaaatcaatcaatcagcacaggaaacacgtat
tctctatttagcagtaacaatgcatggggatctaatgtacaaagttgtaatgtgtcaaat
caagatcaaacaaaaactcggcttaatcaacaatctttatggtttggacctggaccatct
cccttggaacggcttttggaacagcaaaaatcattacgtgaaggaggtacctga
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integrated database retrieval system
