KEGG   Bombus affinis (rusty patched bumble bee): 126917078
Entry
126917078         CDS       T09368                                 
Name
(RefSeq) replication factor C subunit 5
  KO
K10756  replication factor C subunit 3/5
Organism
baff  Bombus affinis (rusty patched bumble bee)
Pathway
baff03030  DNA replication
baff03410  Base excision repair
baff03420  Nucleotide excision repair
baff03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:baff00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    126917078
   03410 Base excision repair
    126917078
   03420 Nucleotide excision repair
    126917078
   03430 Mismatch repair
    126917078
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:baff03032]
    126917078
   03036 Chromosome and associated proteins [BR:baff03036]
    126917078
   03400 DNA repair and recombination proteins [BR:baff03400]
    126917078
DNA replication proteins [BR:baff03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    126917078
  DNA Replication Termination Factors
   ELG1-RFC complex
    126917078
Chromosome and associated proteins [BR:baff03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    126917078
DNA repair and recombination proteins [BR:baff03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     126917078
  Check point factors
   HRAD17(Rad24)-RFC complex
    126917078
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 Rad17 AAA_14 AAA_22 RuvB_N RCF1-5-like_lid AAA_assoc_2 AAA_11 AAA_5 ResIII AAA_16 DUF815 AAA_24 DEAD AAA_7 AAA_30 Mg_chelatase PhoH AAA_19 TIP49 ATPase_2 AAA_2
Other DBs
NCBI-GeneID: 126917078
NCBI-ProteinID: XP_050579483
LinkDB
Position
6:complement(15507395..15509213)
AA seq 329 aa
MTEKPTQTTNLPWVEKYRPKKLDDLISHEEIIKTINKFIDENQLPHLLFYGPPGTGKTST
ILACARKLYTPAQFNSMVLEMNASDDRGIGIVRGQILSFASTGTMYRSGFKLIILDEADA
MTKDAQNALRRIIEKYTDNVRFCIICNYLSQIIPALQSRCTKFRFGPLSTDQILPRLDTI
IKEENLNVSEDGKQALITLSGGDMRKVLNVLQSTSLAFSAVTEENVYSCVGHPLPIDIKN
IINWLLNESYELCYCKIQDIKLKKGLALQDILTELHLFVNKIEFPDSVLIDLVIKLAEIE
KRVSIGCSEAVQLNALVSAFQRARDIEIS
NT seq 990 nt   +upstreamnt  +downstreamnt
atgacagagaaacctactcaaaccaccaatttaccatgggtggaaaagtatcgaccgaaa
aaattagatgatttgatatctcacgaggaaatcatcaaaactataaataaattcattgat
gaaaatcagcttccccatctccttttttatggacctcctggtacagggaaaacaagtaca
atacttgcttgtgcacgtaaattatatacaccagcccaatttaattcaatggtattagaa
atgaatgcttcagatgatagaggtattggtatagttagaggacagatccttagctttgca
agtacaggcacaatgtacagatctggttttaaattaatcatccttgatgaagctgatgct
atgacaaaggatgcccagaacgctcttaggagaataatagagaagtacacagacaatgta
aggttttgtattatatgtaattatctcagtcaaattatccctgcccttcagtctcggtgc
actaaatttaggtttggccctttgtctacagaccaaattttaccaaggctagataccatt
attaaagaagagaatttaaatgtttcggaggatggaaaacaagcattgataacattgagt
ggaggagatatgaggaaagttttgaatgtcctccaaagtacttcgcttgctttcagtgca
gttacagaagaaaatgtttattcttgtgtaggacatcctcttccaattgatataaaaaat
atcatcaattggttgttgaatgaatcatatgaattatgttattgtaaaatacaagacata
aaactaaagaaaggactggcattgcaggatatattaacagaactgcatctatttgtaaat
aaaatcgaatttccagattccgtacttatcgatttggtaattaaactagccgaaatagag
aaaagagtatctattggttgtagtgaagcggtacaattaaatgccctcgtttcagcattt
caaagagctcgcgatatcgagatttcttag

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