Bombus affinis (rusty patched bumble bee): 126917452
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Entry
126917452 CDS
T09368
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X1
KO
K06823
collagen type XVIII alpha
Organism
baff
Bombus affinis (rusty patched bumble bee)
Brite
KEGG Orthology (KO) [BR:
baff00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
baff04147
]
126917452
00535 Proteoglycans [BR:
baff00535
]
126917452
00536 Glycosaminoglycan binding proteins [BR:
baff00536
]
126917452
Exosome [BR:
baff04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
126917452
Proteoglycans [BR:
baff00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
126917452
Glycosaminoglycan binding proteins [BR:
baff00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
126917452
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
Laminin_G_3
DUF1554
RH_dom
Motif
Other DBs
NCBI-GeneID:
126917452
NCBI-ProteinID:
XP_050580273
LinkDB
All DBs
Position
6:13696544..14039725
Genome browser
AA seq
1178 aa
AA seq
DB search
MRPRLQWLIFVLFCVTRVNADFFNEKKELEYDLLQASVALTDDNNLYIDDGLDGFPSFGF
RPGSEVKQPYRLYLPEKLPAEFTLVATFKPTSFRTSYLFAVLNPFETVVQLGIRISDGPG
TNQNVSLVYTNSDLHSHSEEVAKFTVPKLTKKWSKIVIRVSTTDVTLYLNCHEMAKQRVT
RIPLELMFDTASTLYIAQAGPHIQEKYDGLLQSLKLYSGHPADLVRCTADFNFNPDEDLG
SGDINNDLIDGLEDVDTNVPDIGRDDDEDRSEESNPPPFITPPPPNPDYKGPKGEKGDKG
DKGESVRGPPGPPGPPGQDEGPPGKKGEPGTCTCNATALMASFTMPKMIQGPKGEQGVPG
QEGKQGQMGLTGAAGPPGERGLEGPQGPKGDKGDVGIAGPEGPQGQKGEPGRDGIPGEKG
AQGPPGPPGKGEFSGYDPSWKPRGIYRTEGITMRPGLPGQKGEAGLPGSPGPKGETGIAG
AKGYKGEPGHKGAKGDHGKEGPRGIQGFKGEPGAPGAPGLPGAPGENGRPAEKGDKGDTG
PEGKPGPAGAPGPPGLPGLSGSGGVNVGEAMLREKGDKGESGARGYKGDKGTKGEKGDKG
DSGPAGIPGVNGIQGPQGNKGEPGKDGVPGAPGVVGAKGEKGERGPPGATAIASSGDYIT
IKGEKGAEGKRGRRGRPGPPGPVGPPGKTGAMGEIGLPGWANSMKGRPGTPGLPGPVGPV
GPKGEKGEPGTPSPYGVSVGIKGDKGDDGFPGIPGQPGRDGQRGPPGPPGPPGPPSQGNY
IPVPGPPGPPGPPGPPGLSLIGQKGEPGIGRSHIFGERDYYGVRQVPKNIKDFKHNMFFG
TLQGPRTSLDELKALRELKQLKELKEHLGAATTATRGPLESTTKIVPGAVTFQNTEAMTK
MSAVSPVGTLAYIIDEQALLVRVNNGWQYIALGSLLPITTPAPPTTSPPPVNPPFEASNL
INQIPVKADGIGWYPRMLRMAALNEPFTGDMHGVRGADYACYRQAKRAGLRGTFRAFLSS
RVQNVDSIVRLGDRDLPIVNIKGDVLFNSWKEMFNGNGAYFSQNPRIYSFNGKNILTDFA
WPEKVAWHGSHKLGDRAMDTYCDAWHSSSSDRYGLGSPLTGGRLLEQVRYSCDNKFALLC
IEVTSETTRRRRSVEVSEDEDEMSENDYKEYLDSLLEN
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
atgcggcctagattgcagtggttgatattcgtcctgttctgtgtgacgcgcgtcaacgcg
gactttttcaacgagaaaaaagagctggaatatgatttacttcaagcttccgtggcatta
acagacgacaataatttgtacatcgacgatggtctcgacggatttccaagttttggcttc
cgacctggctccgaagttaaacagccgtatcgattatatttgccggaaaaattgccagca
gagttcactttggtggcaacttttaagccgacgtcatttagaaccagttatctcttcgcc
gttctaaatcccttcgaaactgttgtgcaattaggcatccggatatccgatggtccagga
acaaaccagaatgtctcactggtctacaccaattctgatttgcattcgcattcggaagag
gtggcgaaattcacggtgccgaagttgacaaagaaatggtcgaagatcgtaatcagagta
tcgacaactgatgtcaccttatatctaaactgtcacgaaatggccaagcaacgagtaacg
aggattcctctggagttgatgttcgacacagccagcacgttgtacatcgctcaagctggg
cctcatattcaagaaaaatacgatggtctactgcaatccttgaagctctattccggacat
ccagcggatttggtaagatgcacggccgacttcaacttcaacccagacgaggatctcggc
tcaggcgatatcaataacgacttgattgacggtttggaagacgttgacactaatgtgcca
gacatcggacgagacgatgacgaagacagaagcgaggaaagcaatccaccgccattcatc
acaccccctcctcccaatccggactacaaagggccgaagggtgagaaaggtgataaagga
gacaaaggagagagcgttaggggacctccaggtccacctggaccacctggtcaagacgag
ggtccaccagggaagaaaggagaacccggcacgtgcacctgcaatgcaacagccctgatg
gcatcctttacgatgccaaagatgatccaaggaccgaaaggagaacaaggagtgccgggg
caagaggggaaacaaggccaaatggggctgacgggtgcagctggaccacctggagagaga
ggactggaaggaccacagggtcctaagggtgacaaaggagacgtgggaatagcaggaccg
gaaggtcctcaaggacagaaaggggaacctggtcgtgatggaatacccggagagaagggc
gctcaaggacctccaggaccgccaggaaagggtgaattttctggatatgaccccagttgg
aaacctcgaggcatttataggacggagggcatcaccatgagaccaggactgccaggacag
aaaggcgaagccggacttccgggaagcccaggaccgaaaggagagacaggaatcgccggt
gccaaaggatacaagggcgagccagggcacaagggtgcgaaaggcgatcatggaaaagaa
ggtccacgaggaattcaaggattcaagggtgaacctggtgctccgggagcaccggggctt
cctggcgcaccaggtgagaatggaagaccagcagagaaaggtgacaaaggagacacagga
ccagaagggaaaccaggccctgcaggtgcacctggaccaccaggattgcctggattgagc
ggctctggcggagtaaacgttggagaagcgatgttaagggaaaagggtgataagggcgag
agtggtgcacgaggatacaaaggagataagggcaccaaaggcgagaagggagacaaaggt
gattctggaccagccggaattcctggtgtgaatggtatccaaggaccgcaaggcaacaaa
ggcgagccagggaaggacggagttcccggagcaccgggagtcgtcggtgcaaagggcgaa
aaaggtgagagaggtccgccaggagctacagctatagcgagctctggagactacatcact
atcaaaggtgaaaaaggagcagaaggcaagagaggtagaagagggcgtcctggaccacca
ggaccggtcggcccacctgggaagacgggagcgatgggagaaattgggttacctggatgg
gcgaactccatgaaaggtcgtcctggaactcccggacttcctggacctgttggaccagtg
gggcccaagggagaaaaaggagaacccggtacaccgagcccttacggagtctctgtcggc
atcaaaggcgataagggagacgatggtttccctggaattcctggacaacctggaagagac
ggtcaaagaggacctccagggccacccggaccacctgggccaccgtctcaaggaaactat
attccagttccgggtcccccggggcctcctgggccaccaggaccacctggactatctttg
attggacagaaaggagaaccaggaattggtagaagtcacatctttggcgaaagagactat
tacggagttagacaggttccaaagaatataaaagattttaaacacaatatgttctttggc
acgctgcaaggacctagaactagtctagacgaattgaaggctctgcgagaactaaagcaa
ctgaaggaacttaaagaacatttaggtgctgcaaccaccgcaactagaggtcccttagaa
agtaccacgaagatcgtaccaggagctgtgactttccaaaataccgaagctatgaccaaa
atgtctgccgtgagcccagttggaacattagcttatatcattgacgaacaagctctgctc
gttagagtgaacaatggctggcaatacatcgcattgggttcgcttctaccaataactaca
ccagcaccaccaaccacgtcaccgcctccggtgaatccacctttcgaggcttccaacctg
atcaaccagatacccgtaaaagcagacggaatagggtggtatccacggatgttacgaatg
gctgctttgaacgagccatttacgggagacatgcacggtgtacgtggagctgactacgct
tgttatcgacaagcgaagcgagctggtttgaggggtacgttccgagcattcctcagctcc
agagttcaaaatgttgacagcatcgtgagactcggggaccgtgatcttcctatcgttaac
ataaagggcgatgtacttttcaactcgtggaaagagatgttcaacggaaacggggcctac
ttctcgcaaaatccaaggatttacagtttcaatggcaaaaatatcctcaccgactttgcg
tggccagaaaaggtggcatggcacggatcgcacaaattaggagaccgggcaatggacacg
tattgcgacgcctggcattcaagtagttcggatcgttacggattaggatcaccgttaact
gggggacgcctcttggagcaagttcgttattcctgcgacaacaagtttgcgctgctctgt
atagaagtaaccagcgagaccacaagaaggaggagaagcgtcgaagtttcggaggatgag
gacgaaatgtcggagaacgattataaggagtacttggattctctgttggaaaactaa
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