Bombus affinis (rusty patched bumble bee): 126918465
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Entry
126918465 CDS
T09368
Name
(RefSeq) general transcription factor IIH subunit 1
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
baff
Bombus affinis (rusty patched bumble bee)
Pathway
baff03022
Basal transcription factors
baff03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
baff00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
126918465
09124 Replication and repair
03420 Nucleotide excision repair
126918465
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
baff03021
]
126918465
03400 DNA repair and recombination proteins [BR:
baff03400
]
126918465
Transcription machinery [BR:
baff03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
126918465
DNA repair and recombination proteins [BR:
baff03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
126918465
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PH_TFIIH
BSD
Motif
Other DBs
NCBI-GeneID:
126918465
NCBI-ProteinID:
XP_050582338
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All DBs
Position
7:complement(7758456..7763206)
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AA seq
560 aa
AA seq
DB search
MTTSSEDVLMQVGQVRYKKGDGTLYVMNERIAWMLDNRDTVSVSHKYADIKLQKISPEGK
SKIQLQVVLHDGSSSIFHFVNRNGQEAQIKDRDDVKELLQQLLPKFKRKVNKELEEKNRM
LQENPVLLQLYRDLVITQVISSEEFWSQHAAEYTQAKKSQRQEIGVNSAFLADIKPQTDG
CNGLKYNLTVDIIECIFKTYPAVKRKHQENVPHKMSESDFWTKFFQSHYFHRDRINAGTK
DLFTECAKIDDQELKKDIQSGIDDPLVDITSFEDQTLDDNYGNGPSKSDKVSGNIVHQSM
IKRFNQHSIMVLKASTAKQSTQSIQPQLNGSTPSASKTTTLSNQLDERPKKKLRIQEKLI
YDDLDTTHDINTNNSAPLNLNHIDRYLHGPVPGYGNTEPTSEELLMTLNQLRKEVSGWLA
GNSIPRQLATSLVSPAAAVSALGELTPGGSLMKGFREESLGQLIPKDLERELRNVYVCTC
ELLRHFWRSFPPTTPQLEEKAIRMHEALHRFHSAKLKPFEDRVQRDFSAVSQHLTSHLNQ
LLNTAYRKFAVWQQRKMQMR
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atgactacatcatcggaagatgttctaatgcaagtaggacaagttcgttataaaaaagga
gatggcactttatatgtcatgaatgaaagaatagcctggatgcttgataacagagacact
gtatcagtcagccacaaatatgctgacattaagttacaaaagatatcaccagaaggaaaa
tcaaaaatacaattacaagttgtattacatgatggttcatcatctatatttcattttgta
aacagaaatgggcaagaggcacaaattaaagatcgtgatgatgtaaaagaattacttcag
caattattaccaaaatttaaaagaaaagtaaataaagaattggaagaaaaaaatagaatg
cttcaagaaaatcctgtactgcttcagttatacagagatttggttattacacaagttatt
tcatctgaagaattttggtcacaacatgctgcagaatatacccaagctaaaaaaagtcaa
agacaagaaataggagtaaatagtgcttttctggctgatataaaaccacaaactgatggt
tgtaatggattgaaatataatttaactgttgatattatagagtgtatatttaagacttat
ccagcagtaaaaagaaaacatcaagaaaatgtgcctcataaaatgtcagaatctgatttt
tggacaaaattctttcagtcacattattttcatcgagatcgtatcaatgcagggaccaag
gatctttttaccgaatgtgccaaaatagatgatcaagaacttaaaaaagatattcaatcg
ggtattgatgatccattggtggatataacttcttttgaggatcaaactctagatgataat
tatgggaatggacctagtaaatctgacaaagtttcaggaaatattgtacatcaaagtatg
attaagagatttaatcaacatagtatcatggttttaaaggccagcactgccaagcaatct
acacaatccattcaaccacaattaaatggatcaacgccatcagcaagtaaaactacaaca
ctgtctaatcagttagatgaacgaccaaagaaaaaacttagaatacaagaaaaattaatt
tatgatgatcttgataccactcatgatattaatacaaataatagtgcaccattaaatttg
aatcatatagacaggtatttacatggtccagtgccaggatatggtaatacggaaccgacg
tctgaagaacttcttatgacattaaatcaattaagaaaggaagtaagtggttggctggca
ggaaatagtataccaaggcaattagcaacatcattagttagcccagctgcagcagtctct
gccctaggagaattaactccaggtggttctttaatgaaaggcttcagagaagaaagtctt
ggacaattaataccaaaggatttagaaagagaactacgtaatgtatatgtgtgtacatgt
gaacttctaaggcatttttggcgaagtttcccacctacaactccacagcttgaagaaaaa
gctattagaatgcacgaagcattacatagatttcattctgctaaacttaaaccttttgaa
gatcgtgttcaacgagatttttctgctgttagtcaacatttaacaagtcatttaaatcaa
ctattaaatacagcatatagaaaattcgcagtttggcaacaacgtaagatgcaaatgagg
tag
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