Bombus affinis (rusty patched bumble bee): 126918519
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Entry
126918519 CDS
T09368
Name
(RefSeq) regulator of nonsense transcripts 2
KO
K14327
regulator of nonsense transcripts 2
Organism
baff
Bombus affinis (rusty patched bumble bee)
Pathway
baff03013
Nucleocytoplasmic transport
baff03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
baff00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
126918519
03015 mRNA surveillance pathway
126918519
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
baff03019
]
126918519
Messenger RNA biogenesis [BR:
baff03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
126918519
mRNA cycle factors
P-body specific factors
126918519
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
126918519
NCBI-ProteinID:
XP_050582463
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All DBs
Position
7:4105425..4110424
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AA seq
1149 aa
AA seq
DB search
MSEVEETVPEATEATVEQDAVSEEDKQYLTDYIKETEQRLNAKEELRAANLNPNRPPETY
FSKLDSTLKRNTTFVKKLKNFSSTQLDTVLKDMTHLNLTKYVSEVATALVDAKLKMTDVA
PAIKVCSFLHQTYAEFSTHFFENWQRILSLKVVDKIANPSKLRVDLRFYAELVNAGIFTH
KQGLPLLGSALTVLINMDKEEHNNASIILSFCKHCGEDYAGLVSKRVREISEKLGITIPK
SKLLSPDKQQNVRLLLRDYYNSLCKHLLKEHKDLQAFEKQNRKILQTRGELSSERKEKLE
SLQVSYDRLLNNVQSFSDTLDEPMPELPVNSEMKAEAEESLKMISEGEENSILEDMWGDE
ETRRFYEVLPDLTVFLPGSYLKEVPKQDAPISEEALDEEITFDELEETEKVDEPEAEVEE
PQVSNISNKILLDAFITHLPNCVNRELIDNAAVHFLMNLNTKHNKKKLVKALFGVSRIRL
DLLPFYSRLAAILYPVMPDVGNDLCSMLKHDFKYHVRKKDQINIESKVKVVRYIGELVKF
KLYSKIEALYCLKVLLHDFTHHHIEMACNLLETCGRYLFCSPDSHQRTKVYLEQMMRKKA
VTALDSRYVTIIENAYYYVNPPESTGGVSKKDRPPIHEFIRKLLYQDLSKTNTDKVLKWM
RKLDWEDESVSSYAIKCLTAAYNVKYLNIRCVGSLLAGLVAHYETIGPHVVDGVLEDIRL
CMEINLPKFNQRRIAMVKYLGELYNYRMVESGDIFRTLYLLITFGVSMDHSIPSILDPPD
HLFRIRLVCTLLETCGQYFSGGSSKKKLDYFLIFFQNYYWFKYTDPIWTPENPFPVGIDY
MYRDTLTMLRPKMQLFQSYKEAQCAVEELRNTLYPTLGNPIAEDGIERSDAEPDMGVIAE
GDEDIAVTSGNGSGDAKGVADLHFEESEDCSEAQSEEDWTADAERDYTMGTQENTQGDQS
LSEGGTDGVIMDVTELNAALPAGPRRVSCPEDDDFLSALDKMVSDNIQDRMRDSVKPQQV
DISVPLHVKSTKKTYEQLQERPSDNSTVDFVLMLRKGNKQQYKNLAVPVSSELAMNLRNR
EQEQKEEKERVKRLTLNITERQEEEDYQETINQSTRPVTVNLNRERRQKYNHPKGAPDAD
LIFGPKKIR
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaagttgaagaaacggtaccagaagccacagaagcaactgtagaacaagatgct
gtatctgaggaagataaacaatatttgactgattatataaaagaaacagaacagcgacta
aatgcaaaagaagaacttcgagcagctaatttaaatcctaatagaccaccagaaacatat
tttagcaaattagattcaacgctgaaaagaaatactacgtttgttaagaaattaaaaaat
tttagtagcacacaattagatacagttctaaaggatatgacacatttaaatttgacaaaa
tatgtaagtgaagttgctactgctttggtagatgctaaattaaaaatgacagatgtcgca
cctgctattaaggtatgcagcttcttgcatcaaacatacgcagaattctcaactcatttt
tttgagaattggcaaagaattttatctctaaaggttgtggacaaaattgcaaatccaagc
aaacttagagtcgatcttcgattttatgctgaactggtgaatgcagggattttcacacat
aagcaaggattacctctgcttggttctgcattaacagttttaattaatatggataaagaa
gaacataacaatgcaagcatcatattaagcttctgcaaacattgtggtgaagattatgca
ggtcttgtatctaaaagagtaagagaaatatccgaaaagttgggtataactatacctaaa
agcaaattactttctcctgataaacaacaaaatgtgagattattgttacgagattactac
aattcattatgtaaacatttattaaaagaacataaggatcttcaagcttttgagaaacaa
aatcgaaagattttacaaaccagaggcgaactgagctcagaaagaaaagaaaaacttgag
agtcttcaagtatcctatgatcgtttacttaataatgtgcaaagcttttctgatacttta
gatgaacctatgccagaacttcctgtaaatagtgagatgaaagcagaagcagaagaatca
ttgaaaatgattagcgaaggagaagaaaatagtattttagaagatatgtggggagatgaa
gaaaccagacgattttatgaagttttgccagacttaacagtattccttccaggatcatat
ttgaaagaagtacctaaacaagatgctccaataagcgaagaagctttagatgaggaaata
acatttgatgaactagaagaaactgaaaaagtagatgaacctgaggcagaagtggaagaa
ccacaagtttcgaatataagtaataaaatacttctagatgcatttataacgcatttacca
aattgcgtaaatcgtgaattaattgacaatgcggcagtacacttcttaatgaatctcaac
acgaaacataacaagaaaaagctcgtgaaagcattgtttggtgtttctagaattcgttta
gatctactgccattctattcacgattggcagctattctttatcctgttatgcctgatgtt
ggcaatgatttatgttcaatgttaaaacatgactttaaatatcatgtacgaaaaaaggat
caaattaatatagaatcaaaagtaaaagttgttagatacattggtgaacttgttaaattt
aaactttattcaaagatagaagcattatattgcttgaaagttttgttacacgactttaca
catcatcatattgaaatggcttgtaatttgttggaaacatgtggaagatacctattttgt
tcaccagactcacatcaaaggacaaaggtatatttagaacaaatgatgcgtaagaaggca
gtcactgcattagattcacgttatgtaacaataattgaaaatgcatattattatgtaaat
ccaccagaatctactgggggtgtatcaaagaaagacagaccacctattcatgaatttata
aggaaattattataccaagatctctcaaaaacaaatacagataaagttctcaaatggatg
cgtaaactagattgggaagatgaaagtgtatcatcctatgctattaaatgcctcactgct
gcatacaatgttaaatatttgaacattcgatgtgtaggaagtttattagctggacttgtt
gcacattacgaaactataggtcctcacgtagtagatggtgtgttggaagacataagacta
tgcatggaaattaatttaccaaaatttaatcaacgacgtattgctatggttaaatatctc
ggagaattgtataactatcgtatggtagaaagtggagatattttccgaacgttgtatctt
ttgattacatttggagtcagtatggatcactccataccaagtattttagatccacctgac
cacctttttagaattcgattagtctgtacattattggaaacttgtggacagtactttagt
ggtggttctagcaagaaaaaactcgattattttttaatatttttccaaaattattattgg
ttcaaatatacagatcctatttggactccagaaaatccatttccagtgggcatagattat
atgtatcgtgatacattaacaatgttgagaccaaaaatgcaattgtttcaaagttataaa
gaagcacaatgtgctgtggaagaattgcgaaatacattatatcccactcttggaaatcct
attgcagaggatggtattgaacgtagtgatgcagaacctgatatgggtgtaattgctgaa
ggagatgaagatatagctgtaacatctggaaatggtagtggagatgcaaaaggtgtggct
gatttgcattttgaagaatctgaagattgttctgaagcacaatcagaagaagattggact
gctgatgcagaaagagattatactatgggtacacaagaaaatacccaaggagatcaaagt
ctttcagaaggtggtactgatggtgttattatggatgttacagaattaaatgcagcatta
ccggctggtcctagaagagtaagttgtcctgaagatgatgacttcttgtctgctcttgat
aagatggtttcagataatatacaagatagaatgcgagattcagtgaaaccgcaacaagtg
gatatttcagttcctttgcatgtaaaaagtactaaaaaaacatacgagcaactgcaagaa
agaccttctgataatagtacagtcgatttcgtacttatgttaaggaaaggtaataagcaa
caatacaagaatttagcagttcctgtgtcatcagaattagcaatgaatcttcgaaataga
gaacaggaacagaaagaagagaaagaacgagttaaaagattgacactgaatattacagaa
agacaagaagaagaagattatcaagaaacaattaaccagagtaccaggccagtgacagta
aatttaaatagagagcgacgacaaaaatataatcatcctaaaggtgcaccagatgcagat
cttatatttggccccaaaaagatacggtag
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