Bombus affinis (rusty patched bumble bee): 126919376
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Entry
126919376 CDS
T09368
Name
(RefSeq) DNA mismatch repair protein Msh2 isoform X1
KO
K08735
DNA mismatch repair protein MSH2
Organism
baff
Bombus affinis (rusty patched bumble bee)
Pathway
baff03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
baff00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
126919376
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
baff03400
]
126919376
DNA repair and recombination proteins [BR:
baff03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
126919376
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
RSS_P20
AAA_27
Pro-kuma_activ
Motif
Other DBs
NCBI-GeneID:
126919376
NCBI-ProteinID:
XP_050584471
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All DBs
Position
8:929803..941918
Genome browser
AA seq
921 aa
AA seq
DB search
MAVQPNQQFNMDPPSQQSFVRFFKNLPEKLNTTIRFFNRSDYYTLHGNDALFAAQEVFKT
TSVCKMIGAEPYKTEGVILNKNHFESFIRDLLLVKQYRVEVYVNQGSAKNQNWVLEYKGS
PGNLTQFEDTLFGNNDVAVSVHVIAVKLGMEAKSRIVGLSCVDTTATSFSVCEFQDNESF
SNLESLVVTLAPKECLLIQGEGSYEFQTLKQVMERNNVMVTTRKRSEFSSESVIQDLNTL
IKFKKGQQQNVQSLPEVNLSFAMSATSALIKYLDLTSDEGNLNQFAIDQIKESRYLKLDS
AAIKALNIESRVDTSSILNGNAPTSILGILDKCRTSQGHRLLAQWIRQPLKDLCLIKERH
DIVETLVNDNELRTNLSEDHLRRIPDLQVLAKKLARKKSTLQDLYKIYMCISHLPRLLEQ
LSNINVIALKTMFSDPLSELIKDMDKFQQMVEQTIDLDSAEKGDFLVRAEFDDELKELKN
TMDEVEAKLQSQLGKVANDLSIEAGKTLKLESNQQLGYYFRVTLKEEKVLRNKKQYIILD
SNKSGVRFRSNKLNDLNDEYIVARDKYTVEQKKVVTEIIEIAAGYSSTIKAIGNVLASLD
VLTAFASVAVSANKPYVRPEMLPTEAGEFNLIQVRHPCLEIQEGVDFIANDISFKRGECH
FRIITGPNMGGKSTYIRSAGVSALMAHIGSFVPCDQARISLLDCILARVGADDSQLKGLS
TFMMEMIETAAILKTATCNSLVLIDELGRGTSTYEGCGIAWSIAEYLAKEIKCYCLFATH
FHEITKLEEEVSAVKNQHVTALVDDNKLTLLYKVKPGICDQSFGIHVAKMANFPQDVIEF
AKRKQAELEDYQDSVFEGSDNPQKKKDIIKEAEVLIAEFISKCRNLDKSLSDAELEDKIS
TFKREVLSHENPYIKTLLAAS
NT seq
2766 nt
NT seq
+upstream
nt +downstream
nt
atggctgtccaaccaaatcaacaatttaatatggatccaccaagtcaacagagttttgtt
agattttttaaaaatctaccagaaaaacttaataccactatacgattttttaatagatca
gattattacacattacatggtaatgatgctttatttgctgcacaagaagtttttaaaact
acgtcagtttgtaagatgataggagctgaaccatataaaaccgagggtgttattcttaac
aaaaatcattttgaatcttttatacgtgatctactgttagtaaaacaatatagagtagaa
gtttatgttaatcaaggatcagcaaaaaatcaaaattgggtattagaatataaaggttct
cctggaaatttaacacaatttgaagatacactgtttggcaataacgatgttgctgttagt
gtacatgtcatagcagtgaaattaggaatggaggcaaaatctagaattgttggcttaagc
tgtgtagatactacagcaacttcattttctgtttgtgaatttcaagacaatgaatcattt
tccaatttggaatcactggttgttacactcgcacccaaagaatgtttattaattcaaggt
gaaggcagctatgaattccaaactcttaaacaagtcatggaacgaaataatgtaatggtt
actacaagaaaaagaagcgaattttctagtgaatcagttatacaagatttaaatacttta
ataaaattcaagaaaggtcaacaacaaaatgtacagtctttacctgaagtcaatttaagc
tttgccatgtcagctacttctgcgcttattaaatatttagatttaacatcagatgaaggg
aatttaaatcaatttgctatagaccaaataaaggaatcacgttatttaaagctagattca
gctgctataaaagcacttaatattgaatcacgtgttgatacctcttctattttaaatgga
aacgcacctacaagtattttgggcattttggataaatgtaggacttcacaaggtcataga
ttgcttgcacaatggattagacaacctttaaaagatttatgtcttataaaagaaagacat
gatattgttgaaacactagtgaatgataatgaattacgaactaatcttagtgaagatcat
ttaagacgcataccggatttgcaagtgcttgcaaaaaaattggccagaaaaaaatcaact
ttacaagacctttataagatttacatgtgtatatcgcatttgcctagattattagaacag
ctttctaatataaacgtaatagccttaaaaacaatgttcagtgatcctttgagtgaactt
attaaagacatggacaaatttcaacaaatggttgaacaaacaattgatttagattccgcc
gaaaaaggagatttcttagtacgagccgaatttgatgatgaattgaaagaattaaaaaat
actatggatgaagtggaggcgaaattacaatctcaattgggtaaagttgctaatgatctt
tcaattgaagctggaaaaactctaaaactagaatcaaatcaacagcttggatattatttt
cgtgtaacattgaaagaagaaaaagtactaagaaataaaaaacagtatattattctggat
tctaataaaagcggtgtacgatttcgaagcaataaattaaatgatttaaacgatgaatac
attgttgctagagataaatatacagtggaacaaaaaaaggttgttacagaaataattgaa
attgcagccggttacagtagtacaataaaagctattggaaatgtattggcatctcttgat
gtacttactgcttttgcttctgttgctgtaagtgctaataaaccatatgtacgtcctgaa
atgctacctactgaagctggtgagtttaatcttattcaagttcgacatccatgtttggaa
attcaagaaggagtagattttatagctaatgatatcagttttaaaagaggcgaatgtcat
tttcgcattataactggtccaaatatgggaggtaaaagcacctatataagatctgctggt
gtcagtgctttaatggcacatattggaagctttgttccttgcgatcaagcaagaatatca
ttattggattgtatattagctcgtgtaggagctgatgattctcaattaaaggggctttct
acatttatgatggaaatgatagaaactgctgctatattaaaaacagcaacttgtaattcc
ctcgtgttaattgacgaattaggcagaggaacctccacttatgaaggttgcggtatagca
tggtcaatcgccgaatatttagcaaaagaaatcaagtgctactgcctttttgcgacgcat
tttcatgaaataactaaattagaagaagaagtatctgccgttaaaaatcaacacgttaca
gcccttgtagacgataataaattaactttattatataaagtaaaacctggtatatgtgat
caaagttttggcatacatgtcgctaaaatggctaatttcccacaagatgttatagagttt
gctaagcgtaaacaagcagagcttgaagattaccaagactcagtttttgaaggttctgat
aatccacaaaaaaagaaagatattataaaggaagctgaagttcttattgcagaatttatt
agtaaatgcaggaatttagacaaatcattatctgatgcggaactagaagataaaatttca
acatttaagagagaagttctatctcacgaaaatccctacataaagacacttctagcagct
tcttaa
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