Bombus affinis (rusty patched bumble bee): 126919586
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Entry
126919586 CDS
T09368
Name
(RefSeq) exosome complex component RRP42 isoform X1
KO
K12589
exosome complex component RRP42
Organism
baff
Bombus affinis (rusty patched bumble bee)
Pathway
baff03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
baff00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
126919586
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
baff03019
]
126919586
Messenger RNA biogenesis [BR:
baff03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
126919586
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
126919586
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
126919586
NCBI-ProteinID:
XP_050584936
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All DBs
Position
8:16429819..16431688
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AA seq
291 aa
AA seq
DB search
MAETVLSSGEKTFILHGIDADFRNDGRRRCEYRSMEIETKLMPQTHGSARLRIGNTDILV
GIKIELDVPHADRSNEGKLEFFVDCSATATPAFEGKGGDDLATEISNILTAAYQTPNAFD
LRTLCILPHKKCWKIYVDILILQCGGNLFDAVGIAVKAALNSTEIPKITAATLDGGEPDI
ELSDDAYDCIRLDTSNYPIIVTLCKIGDNYIVDPTSEEEVCSASSIVMSVLPNGKVSSVI
KLGYGSIQPNTFIKMLQMGKNIGLQLNESLMKALKEESQLGQQRQILGFLR
NT seq
876 nt
NT seq
+upstream
nt +downstream
nt
atggcagaaactgttttaagttccggtgaaaagacttttattctccatggaatagatgca
gactttagaaatgatggtaggcgacgatgcgaatatcgatcaatggaaattgaaactaaa
ttaatgccacaaacacatggatcagcaagattacgcataggaaatacagatatacttgtt
ggcattaaaatagaacttgatgtacctcacgctgacagatcaaatgaaggaaaattagaa
ttttttgttgattgttctgctactgcaactccagcatttgaaggaaaaggtggtgatgat
ttagcaactgaaataagtaacattttaacagctgcttatcaaacgcctaatgcttttgat
ttaagaacattatgtattttacctcataagaaatgttggaaaatatatgttgatattttg
attcttcagtgtggtggcaatctttttgatgcagtaggaattgcagttaaggctgcatta
aatagtacagaaataccaaaaattacagctgcgactctggatggtggagaaccagatatt
gaattatcagatgatgcttatgactgcatacgattagataccagcaattatccaattatt
gttacactgtgcaaaattggagataattatatcgtggatccaacctcggaagaagaagta
tgtagtgcaagtagtattgtcatgtctgtattaccaaatggtaaagtttcatcagtgatt
aagttgggttatgggagcattcagcctaatacttttatcaaaatgttgcaaatggggaaa
aatataggattacaattaaatgaaagtcttatgaaagcactgaaagaagaaagtcaacta
ggacaacaaagacaaatattaggatttcttagataa
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