Bombus affinis (rusty patched bumble bee): 126919723
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Entry
126919723 CDS
T09368
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
baff
Bombus affinis (rusty patched bumble bee)
Pathway
baff03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
baff00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
126919723
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
baff03019
]
126919723
03041 Spliceosome [BR:
baff03041
]
126919723
03009 Ribosome biogenesis [BR:
baff03009
]
126919723
03016 Transfer RNA biogenesis [BR:
baff03016
]
126919723
Enzymes [BR:
baff01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
126919723
Messenger RNA biogenesis [BR:
baff03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
126919723
Spliceosome [BR:
baff03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
126919723
Complex C
U4/U6.U5 tri-SnRNP related factors
126919723
Ribosome biogenesis [BR:
baff03009
]
Eukaryotic type
Pre-60S particles
Helicases
126919723
Transfer RNA biogenesis [BR:
baff03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
126919723
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
ResIII
DEXQc_Suv3
Helicase_C
nSTAND3
ATPase_2
Motif
Other DBs
NCBI-GeneID:
126919723
NCBI-ProteinID:
XP_050585215
LinkDB
All DBs
Position
8:complement(16385146..16389294)
Genome browser
AA seq
1021 aa
AA seq
DB search
MANFTEDLFDVFEETEDIEVIPTPIKSRNEDINVSLNEKATNAESGTKRELENNSDAFIS
KKLRPDPVLEDLNIEELTSRIKIHTIETIESCTHEVAVPPDYEYVSLENKQGKPAKEYKF
VLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIACSLRDKQRVIYTTPIKALSNQK
YREFFEEFEDAGLVTGDVTINPTASVLIMTTEILRNMLYRGSEVMREVGWVIFDEIHYMR
DKNRGVVWEETLILLPDNVHYVFLSATIPNARQFVEWVAHLHKQPCHVVYTDYRPTPLQH
YIFPVGGDGIHLVVDETGQFKEENFNRAMACLHHGDAAKGDTKGRKGGIRPSNAGQTNIF
KMVKMIMERNFAPVIIFSFSKKDCEIYAMQLAKLDLNTLEEKKLVDEVFNNAMDVLNEED
RRLPQVENVLPLLRRGIGIHHGGLLPILKETVEILFGEGLIKALFATETFAMGLNMPART
VLFTSSRKFDGKDFRWITSGEYIQMSGRAGRRGLDEKGIVILMIDEQVSPVVGKAIVQGK
PDPINSAFHLTYNMVLNLLRVEEINPEYMLERSFYQFQNQASIPDLYNKAKDLQIAYNAV
TIDRYNHISSYHDIREQLDHLSTEFRSFLTKPVYLLPFLQPGRLVKVKNENEMFDWGIIV
NFKKKSPKNPMKESTAIIIDILLHVSKDSKEGCPVPCHEGEEGDVEVVPVIHTLISQISS
LRLYYPKDLRPSDNRKSVLKTIQEVKKRFPDGPPLLNPITDMHIEDEAFKDIVKKIEVLE
EKLYAHPLHKDPDVNTLYEQFLHKEDLSNQLKQAKLELKQAKSILQMDELKCRKRVLRRM
AYCTASDVIELKGRVACELNGADELLMTEMIFNGLFNSLSVPQMVALISCFVCDDKSNEM
LKCTEELSGPLRQMQDLARRIAKVSTEANLELDENAYVEQFKPYLMDVVYAWCKGATFLQ
ICKMTDIFEGSIIRCMRRSEEVLRQLCQAAKNIGNTDLENKFSEAIKLIKRDIVFAASLY
L
NT seq
3066 nt
NT seq
+upstream
nt +downstream
nt
atggctaattttactgaagacttgtttgacgtttttgaagaaacagaagatatagaagtg
attccaactccaataaagtcaagaaatgaagatataaacgtatcgttaaacgaaaaggca
accaatgcagaaagtggaactaaacgagaacttgaaaataattctgatgcatttatttct
aaaaaattacgacctgatcctgtattggaggatttaaatatagaagaattaacatcacgt
atcaaaatacatacaatagaaacgattgagtcatgtacacacgaagttgcagttccacca
gattatgaatatgtatccctggaaaataaacaaggcaaaccagcaaaagagtacaaattt
gtattggatccttttcaaaaagaagcaatattatgcatcgagaataatcaatctgtttta
gtttccgcacatacatcagctggtaaaactgttgttgcagagtatgcaatagcatgttca
ttgagagataaacaaagagttatctatacaacacctataaaggcattaagtaatcaaaag
tacagggaattttttgaagagtttgaggatgcaggtttagtaactggagatgttacaatt
aatccaacagcaagtgtgcttatcatgactactgagattttaaggaatatgctttatcga
ggatctgaggtaatgcgggaagttggatgggtaatttttgatgaaattcattatatgcgt
gacaaaaacagaggagttgtttgggaagaaacattaatattattaccagataatgtgcac
tatgtatttctttctgctactatacctaatgccagacagtttgtagaatgggttgcacat
ttacataagcaaccatgccatgttgtttatacagattatagaccaactcctttacaacat
tatatattccccgttggaggtgatggtatccacttggttgtagatgaaacgggacaattt
aaagaagaaaattttaatagagcaatggcttgtttgcatcatggtgatgcagctaaaggg
gatactaaaggacgtaaaggaggtattcgtccatcgaatgctgggcaaacaaatattttt
aaaatggttaagatgattatggaaagaaatttcgcacctgtaattatatttagtttttca
aaaaaagattgtgagatatatgcaatgcaattggctaaattagatttaaatacattagaa
gaaaagaagttagtagacgaggtatttaataatgctatggatgttcttaacgaagaagat
cgacgtttgccacaagttgaaaatgtattaccgcttttaagacgaggtataggtattcat
cacggtgggcttttacctattttgaaagaaactgtggaaatattgtttggagaaggatta
ataaaagcactcttcgcgaccgaaacttttgctatgggattaaatatgccagcacggaca
gttctatttacatcatcgcgaaaatttgatggtaaagactttcgttggattacatccgga
gaatacatacaaatgtctggtcgagcaggcagaagaggtttagatgaaaaaggaatagta
atattaatgatagatgaacaagttagtcctgtcgttggtaaagcaattgtacaaggaaaa
ccagatcctattaattcagcatttcatttaacttataacatggttttgaaccttttgaga
gttgaagaaattaatccggaatatatgcttgagaggagcttttatcaatttcaaaatcaa
gcatctattccagacctatataacaaggcgaaggatttgcaaattgcatataatgcagtg
actattgataggtataaccatatatcttcttatcatgatatacgtgagcaacttgaccat
cttagcactgaatttaggtcatttttgacgaaaccagtatatttacttccatttttacaa
cctggaagattagtaaaagtaaaaaatgaaaatgaaatgtttgattggggtattattgtg
aattttaaaaagaaaagccctaaaaacccaatgaaagaaagcactgctattattattgat
atattacttcatgtttctaaagactccaaggaaggttgccctgtaccttgtcatgaagga
gaagaaggtgatgtggaagtagtccctgttatacacacattaatttctcaaattagttca
cttagattgtattatccaaaggatttaagaccatctgataacaggaaaagcgtattaaaa
acgatacaggaagtaaagaaaagatttcctgatggaccaccattattgaatcctattaca
gatatgcatatcgaagacgaagctttcaaagatattgttaaaaaaattgaagtgttagaa
gaaaaattatatgctcatcctttgcataaggatcctgatgtaaatacgctatatgaacaa
tttttacataaagaagatttaagtaatcaactaaaacaagctaaactagaattaaaacaa
gctaaatcaatacttcaaatggatgaactaaaatgtaggaaacgagtattgcgaagaatg
gcctattgtacggcatcagatgtgatagaactaaaaggcagagttgcttgtgagctgaat
ggagctgatgaattgttaatgacagaaatgatttttaatggtttgtttaattcgctaagt
gttccgcaaatggtagcgttaattagttgttttgtttgtgatgacaaatcaaatgagatg
cttaagtgtactgaagaattaagtggtccactcagacaaatgcaagatttagctcgaaga
atagcaaaagtatctacagaagctaatttagaattagatgaaaacgcatatgtagaacaa
tttaaaccgtatttaatggacgttgtatatgcttggtgtaaaggagctacctttttgcaa
atttgcaaaatgacagacatatttgaaggctctatcataagatgtatgcgtcgttcggaa
gaagttcttagacagttatgtcaagcagcaaaaaacattggaaatacggatttagagaat
aaattcagcgaagcaattaaacttataaagcgtgatatcgtttttgctgcatctttatat
ttataa
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