Bombus affinis (rusty patched bumble bee): 126919742
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Entry
126919742 CDS
T09368
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
baff
Bombus affinis (rusty patched bumble bee)
Pathway
baff03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
baff00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
126919742
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
baff03041
]
126919742
Spliceosome [BR:
baff03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
126919742
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
EIF3I
WDR55
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
Beta-prop_WDR90_POC16_2nd
PRP4
ANAPC4_WD40
Beta-prop_TEP1_C
Beta-prop_EML
Beta-prop_EIPR1
NBCH_WD40
WDR90_beta-prop_4th
Beta-prop_DCAF4
Beta-prop_RIG_2nd
Beta-prop_IFT122_1st
WD_LRWD1
Beta-prop_SCAP
Ge1_WD40
Beta-prop_SPT8
Beta-prop_IFT140_1st
Beta-prop_HPS5
Beta-prop_Nup120_160
Nbas_N
Motif
Other DBs
NCBI-GeneID:
126919742
NCBI-ProteinID:
XP_050585262
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Position
8:15696052..15698560
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AA seq
525 aa
AA seq
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MSDDEDLVYVKKQKTVHYGSLEEAERARLVAVAESSEEEKNITNLGDNANATATLGNIHI
SNEYMELEDEMSKDRQALLEEFERRKKARQINVSTDDSEVKKNLRQLDEPICLFGEGPAD
RRTRLRELLANLGEDAIKKKHEEEEKPSHPIERDTETTWYHEGPDSLQIARSWIATYSLP
RAKARLGKARQDLELPTATRTARRQELLKKLQALTIYCSQIGDTRPISFCQFSPNSKLLA
TASWSGLCKIWSVPDCTLLRTLKGHTCNVGCIVFHPKATITEEVVGEKSGQTCVLASCAS
DGTVKLWSGGSGEEPLAEVEGHEPHRVSRLAFHPSGRFLGTCCYDASWRLWDLEQQAEVL
HQEGHARAVHCISFQGDGSVSATGGHDSFGRVWDLRTGRCIMFMEGHLKSIFGIDFSPNG
FHIATASEDNTSKIWDLRKRSCVYTIPAHTNLLSDVKYQRIEGQYLVTASYDNTAKIWSN
KTWQPLKTLPGHDGKVMSVDISPDHKFIGTSSYDRTFKLWAPENM
NT seq
1578 nt
NT seq
+upstream
nt +downstream
nt
atgtcagatgacgaagatttggtttatgttaagaagcaaaagactgttcattatggatcc
ctcgaagaagcagagcgtgctagattggttgctgtggctgaatcttctgaagaagaaaaa
aatatcacaaatttgggagataatgccaatgctacagctactttgggaaacattcatata
tcaaatgaatatatggaacttgaagatgagatgtctaaagatagacaagctctcttagaa
gaatttgaacgtagaaagaaagctcgtcaaatcaatgtgtccactgatgattctgaagta
aagaaaaatttgagacaattggacgagcctatttgtctctttggtgaaggacctgcggat
aggagaacaagactgagggaattattggctaatttgggtgaagatgcaattaaaaagaaa
cacgaagaggaggaaaaaccatcccatccaattgagagagacacagaaacaacatggtat
catgaagggccagactcacttcaaatagcacgttcttggattgctacgtattcattgccc
agagcaaaggcaagattgggtaaggcaaggcaggatttggagttgccaacagctacgcgt
acagcacgtcgtcaagagcttctaaaaaagttacaggctttgacaatttactgttctcaa
attggagatactaggccaatctctttctgtcagttcagtccaaattccaaattgctcgct
acagcttcatggtcaggcttgtgtaaaatatggtctgtacctgactgtactttgttaaga
acacttaagggacacacttgtaatgttggctgcattgtttttcatccaaaagctactatt
actgaagaggtggtaggagaaaaatctggacagacttgtgtgttagcatcttgcgcttcg
gatggaacagtaaagttgtggagtggtggatctggggaggaacccttagccgaagtcgaa
ggacatgaaccacacagagtttcaaggctagcatttcatccatcgggtagatttcttggg
acatgttgctatgatgcatcttggagactttgggacttggaacagcaagcagaagtctta
catcaggaaggtcatgccagagctgtgcattgtattagttttcagggtgatggtagtgtc
agcgccacaggtggtcatgactctttcggtcgagtgtgggaccttcgcacaggacggtgc
attatgtttatggagggtcatttgaaatctatctttggtatcgatttctccccgaatgga
tttcacatagcaacagcgagcgaagataatacttctaagatatgggatttacgaaaaaga
tcttgcgtgtatacgatacctgcgcacacaaatttactatcagacgtgaaataccaaagg
atagaaggacaatacctagtcacagcatcgtacgataatactgcgaaaatatggtcaaat
aaaacctggcaaccacttaaaacgttaccaggtcacgatgggaaagttatgtccgtcgat
atttctcccgatcataaattcatcgggactagttcgtacgatcgaacgttcaaattgtgg
gctccagaaaacatgtaa
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