Bombus affinis (rusty patched bumble bee): 126919845
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Entry
126919845 CDS
T09368
Name
(RefSeq) putative U5 small nuclear ribonucleoprotein 200 kDa helicase
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
baff
Bombus affinis (rusty patched bumble bee)
Pathway
baff03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
baff00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
126919845
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
baff03041
]
126919845
Enzymes [BR:
baff01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
126919845
Spliceosome [BR:
baff03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
126919845
Complex C
U5 SnRNP specific factors
126919845
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
SNRNP200_wHTH
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
HTH_61
PhoH
nSTAND3
Motif
Other DBs
NCBI-GeneID:
126919845
NCBI-ProteinID:
XP_050585422
LinkDB
All DBs
Position
8:7151324..7159382
Genome browser
AA seq
2134 aa
AA seq
DB search
MADAAARQLQYEYKANSNLVLQADVRLIERRSRDEATGEVMSLVGKLDGTRMGDRAQRTK
PGKAEERKVKRQKRDEAQYDFARMKGATLLSEGVDEMVGIVYRPKTQDTRQTYEVLLSFI
QEALGDQPRDILCGAADEVLAVLKNDRLKEKEKKKETELLLGPLAEERFALLVNLGKKIT
DFGSDEKTTTNEENIDETYGINVQFEESSEEDDEDVYGEVRENDDEGDEGEEANDDRAIH
AENLGGAEEMKKEKPLHPLDIDAYWLQRRLSRIYDDAMVSQARAAEVLAVLKDAGDDRDC
ENQLVLLLGYDCFDFIKQLKKYRHTIAYCTMLASSQSESERQKIRNKMNDDPVLAKILRQ
LDTGKGDDDADETMEARAQRKRREENEDTGGPGGQVQGTRNLIDLEDLIFAQGSHFMANK
RCQLPDGSFRKQRKGYEEVHVPALKPKPFAENEKLYPIDQLPKYVQPAFEGFKTLNRIQS
RLYQAALESDENLLLCAPTGAGKTNVALLCMMREIGKHINADSTINADEFKIIYVAPMRS
LVQEMVGTFGKRLSTYNLTVSELTGDHQLTREQIAATQVIVCTPEKWDIITRKGGEKTFT
SLVRLIIIDEIHLLHDERGPVLEALVARTIRNIETTQEDVRLIGLSATLPNYQDVAAFLR
IKPESGLFYFDNSFRPVALEQQYIGVTEKKALKRFQVMNEIVYEKTMEHAGRNQVLVFVH
SRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEAEQVKNQELKDLLPYGFAIHH
AGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYNPEKGRWVELGA
LDVLQMLGRAGRPQYDTKGEGILITNHSELQYYLSLLNQQLPIESQLISKMSDMLNAEIV
LGTIQNIRDAVTWLGYTYLYIRMLRCPSLYSISQDKLKEDPLLELHRADLIHSAAVALDR
SGLIKYDRKSGNFQATELGRIASHYYCTHDTMSIYNQLLKRTLSEIELFRVFSLSSEFKH
INVREEEKLELQKLMERVPIPVKESIEEASAKVNVLLQAYISQLKLEGFALMSDMVFVTQ
SASRLMRAIFEIVLFRGWAQLGDKCLSLCKMIDRRMWQSMSPLRQFRKMPEEIVKKIEKK
NFPWERLYDLGPNEIGELIRVPKLGKTIHKYIHQFPKLELSTHIQPITRSTLRVELTITP
DFQWDEKIHGASEAFWILVEDVDSEVILHHEYFLLKAKYATDEHLIKFFVPVFEPLPPQY
FLRVVSDRWIGAETQLPVSFRHLILPEKNLPPTELLDLQPLPITALRNSKFENIYADKFP
QFNPIQTQVFNAIYNSDDNVFVGAPTGSGKTTIAEFAVLRLLTQNPEGRAVYMVSKEALA
ELVYVDWSSKFNQQLGRKVVLLTGETGTDLKLLAKGQIIITTADKWDVLSRRWKQRKNVQ
NIQLFIVDELQLIGGEEGPVLEVACSRARYISSQLDKPTRIIALSASLADAKDAAQWLGA
PAAATFNFHPSVRPVPLELHVQGINITHNASRLAAMAKPVYNAILRHASHKPVIVFVPTR
RQARLTAIDLLTFTAAEGQPSRFFHAEEADIKPFLDRMTDKTLKETLSQGVAYLHEGLSV
DDRHLVEQLFDSGAIQIAVATRDLCWGLSISSHLVVVMDTQCYNGKTHAYEDYPITDVLQ
MVARANRPLEDDDAKCVLLCQSSKKDFFKKFLNEPLPVESHLDHRLHDHFNAEIVTKTIE
NKQDAVDYLTWTFLYRRLTQNPNYYGLQGVTHRHLSDHLSELVESTLSDLEQAKCVAVED
EMDTLPLNLGMIAAYYYINYATIELFSLSLNNKTKIRGLLEIISAAAEYENVPVRQREEN
LLRSLATRLPHAPQATRMADPHVKAQLLLQAHLSRILLGPELQKDTELVLSKAIRLIQAC
VDVLSSSGWLAPAVAAMELAQMVTQAMWSKDSYLKQLPHFTPETIKRCTDKGVETVFDVM
ELEDDDRNRLLQLSETQMADVAKFCNRYPNIEMSYEVQDKDKLRSGGTVNVIVQLEREDE
VTGPVVAPFFPQKREEGWWVVIGDPKTNSLLSIKRLTLQQKAKVKLDFVAPAPGQHSYTL
YFMSDAYLGCDQEYKFTISVEEYESDVSSGSESD
NT seq
6405 nt
NT seq
+upstream
nt +downstream
nt
atggcagacgctgcagcgaggcagttgcagtacgaatataaagctaattctaatctcgta
ttacaagctgatgtgcgattaatagaaagacgtagtagagatgaagctactggcgaggtt
atgtcccttgttgggaaactggatggaacgcgaatgggtgatagagcacaacgtactaaa
ccaggaaaagcagaggaacgaaaagtcaagcgtcagaaacgagatgaagcacaatatgat
tttgcacggatgaaaggtgcaacattgctttcagaaggcgtagatgagatggttggaatt
gtttatcgtcctaagactcaagatacacgtcaaacctacgaagtattactgagttttatt
caagaagccttaggagatcaacctagagatattctttgtggtgctgctgatgaagtatta
gcagttttaaaaaatgaccggcttaaggaaaaagaaaagaagaaagaaacagaattatta
ttgggtccattagctgaagaaagatttgcattattagtgaaccttggaaaaaagataaca
gattttggtagtgatgagaaaactactacaaatgaagaaaatattgatgaaacatatgga
attaatgtacaatttgaagaaagcagcgaagaagatgatgaagatgtttatggagaagtt
agagaaaatgatgatgaaggtgatgaaggtgaagaagctaatgatgacagagctattcat
gcagaaaatttgggtggtgccgaagaaatgaagaaagagaagccattacatcctttggat
atagatgcatactggttgcaaaggagattaagtaggatatatgatgatgctatggtctca
caagcaagagctgcagaagtattagcagttttaaaagatgctggagatgatcgtgactgt
gaaaaccaactagtacttttgctaggttatgattgtttcgacttcattaaacaactcaaa
aaatataggcatacaattgcttattgcactatgttggcatcctcgcagtctgaatcagaa
cgtcaaaaaattcgaaataagatgaatgatgatcctgtattggcaaaaattttgcgacaa
ttagatacaggtaaaggtgatgatgatgccgatgaaacgatggaagcaagggcacaacgt
aaacggagagaagaaaacgaagatactggaggtcctggagggcaagttcagggtacaaga
aatctaatagatctagaagacttgatatttgcacaaggtagtcattttatggcaaataaa
cgttgtcagttacctgatggaagtttcagaaagcagcgtaaaggatatgaagaagttcat
gttcctgctttaaaaccaaaaccatttgcagaaaacgagaaactttacccaattgatcaa
ttgccaaaatacgtgcaaccagcttttgaaggatttaagacattaaaccgaattcagagt
cgtttatatcaagctgcattagaaagcgatgagaatttactactgtgtgcaccaacaggt
gctggtaaaactaatgttgctcttttatgtatgatgcgtgaaattggaaaacatataaat
gcagatagtacgattaacgcggatgaattcaaaataatttatgttgcaccaatgcgttct
ttggtacaagaaatggttggaacttttggtaaaagattatccacgtataatttaaccgtt
tcggaattaaccggtgatcatcaattaacaagagaacagatagctgcaactcaagttatt
gtctgcactcccgaaaaatgggatattataacgcgaaaaggaggagagaaaacctttact
tcattggttagattaattattattgatgaaattcatttgctacatgatgagagaggtcct
gttttggaggcattagtggctagaacaatcaggaatattgaaacaacgcaggaagatgta
agactaattggtctttctgcaacattaccaaattatcaagacgtcgcggcatttttacgt
ataaaaccagaatcaggattattttattttgataatagttttagacctgttgcattagaa
cagcaatatataggtgtaacagaaaagaaagcattgaaacgttttcaagtgatgaatgaa
attgtatatgagaaaacaatggaacatgctggcaggaaccaagttttagtttttgttcat
tcacgaaaagaaactgggaaaacagcacgtgctattagagatatgtgtttggaaaaagac
acattaggacaatttcttagagaaggatctgcatcaatggaagttttaagaacagaagct
gagcaagttaaaaatcaagaactcaaagatttattaccttatggttttgctattcatcat
gctggtatgacaagagtagacagaacattagttgaagatctttttgctgatagacatata
caagtactagtatccacagcaactttagcttggggtgttaacttaccagcacatacagtt
atcataaaaggaactcaagtctataatccagagaaaggtagatgggttgaattaggtgct
ctagacgtattgcaaatgttgggtagagctggtcgtccacagtatgatacaaaaggtgaa
ggtattcttattacaaatcatagtgaacttcaatattatttgtccctactaaatcagcag
ttacctattgaatcacaattaattagtaaaatgtcagatatgttaaatgcagaaatagta
ttaggcactatacaaaatattagagatgcagttacttggttaggatacacatacttatac
attagaatgcttcgttgtccaagtttatatagtataagccaggataaactaaaagaagat
ccactacttgaattacacagagcagatcttattcattctgccgcagtagcattagatcgc
agtggtttgattaaatatgatcgaaaatctggaaatttccaagctactgaactaggtcga
atagcgtcgcattattattgtactcatgacactatgtctatatacaatcaattactaaaa
cgtactctaagtgaaattgaattgtttagagtgttttcattatctagtgaatttaaacat
ataaacgttagagaagaagagaagttagaattgcagaaattgatggagagagttccaata
ccggtaaaagaaagtatagaagaagcaagtgcgaaagtcaatgtacttttacaagcatac
atctctcaattgaaacttgaaggatttgctcttatgtctgatatggtatttgttactcaa
tccgcatcgcgattaatgagagctatctttgaaatcgtcttatttcgtggctgggcacaa
ctaggcgataaatgtctatccttatgtaaaatgatagatcgtagaatgtggcaatcgatg
tcacctcttaggcaattcagaaaaatgccagaggaaattgtaaaaaagatagaaaaaaag
aattttccctgggaaagattgtatgatttaggaccgaatgaaatcggtgaattgattcga
gtaccaaagctaggtaaaactattcataaatatattcatcagtttccaaaattagaacta
tcgacgcacattcaaccgattacccgttctactttaagagtagaactaactattacacca
gactttcaatgggatgaaaaaatacatggagcatctgaagcattttggattttagttgaa
gatgtagattcggaagtgatacttcaccatgaatattttttactcaaggccaaatatgca
acagacgaacatttgatcaaattttttgttcccgtatttgagcctttaccaccacaatac
tttttacgtgtagtatcagatagatggattggggcggaaactcaattgcctgtcagtttt
cgacatttaattttgccagaaaagaatttaccaccaactgaattacttgatttacaacct
cttccaattactgcgttacgtaattcaaagttcgaaaacatttatgcagataaatttcca
caatttaatccaattcagacacaagtttttaatgctatttacaattcagatgataatgtc
tttgttggtgcacctacgggttcaggtaaaacaaccattgcagaatttgctgtattacgt
ttactgacccaaaatccagaaggaagagctgtatacatggttagtaaagaagctttagca
gagttagtttatgtggattggtcatcaaaatttaatcaacaactaggtaggaaggtagtt
cttctgactggtgaaacaggaacagatttaaaattgcttgcaaaagggcagatcataatt
acaactgcagataaatgggatgtattatcacgaagatggaaacaaagaaaaaatgtacaa
aacattcaacttttcattgttgatgaacttcaattaattggtggagaagaagggcctgta
ttagaggttgcatgttcaagagcacgatatatttcttcacagctagataaaccaaccaga
attatagcattgtcagcttcacttgctgatgctaaagatgctgctcaatggttaggtgca
cctgctgctgcaacattcaatttccatccgtctgttaggcctgtacctctagagttgcat
gtacaaggaataaatattactcacaatgcatctagattagctgctatggcaaaaccagtg
tataatgcaatacttagacatgcatctcataaaccagtcattgtttttgtacctactcgt
cgtcaagctagattaacagccatagatttgttaacattcactgcagctgaaggacaacct
tctcgattcttccacgcagaagaagctgatattaaaccgttcttagatagaatgacagat
aaaacattgaaagaaacgctctcacaaggcgttgcttatcttcacgaagggctctctgtg
gatgatcgacatctggttgaacaacttttcgatagtggtgctattcaaatagcagttgct
acgagagatctttgttggggtttatctattagttctcatcttgttgttgttatggatacc
caatgttacaatggaaagacacatgcatacgaagattatccaattacagatgttttacaa
atggtagcacgtgcaaatcgtccgttagaagatgacgatgccaaatgtgtccttctttgt
cagagttcaaagaaagacttctttaagaaattcttaaacgaacctttgcccgtagaaagt
catttagatcataggttacatgatcatttcaatgcagaaattgtgactaaaacaattgaa
aataaacaagacgcagttgattatcttacatggactttcttatatagacgacttacacag
aatccaaattattatggattacaaggtgttacacataggcatttatcagatcatttatct
gaattggttgaaagtactttgagtgacctagaacaagcaaaatgtgtcgctgtagaagat
gaaatggacaccttgcctttgaatcttggcatgattgcagcttattattatattaattat
gcgacaattgagttgttcagtctttctttaaataataaaaccaaaatcagaggtttgctg
gaaattatctcagctgctgctgaatatgaaaatgttccagttaggcagcgcgaagaaaat
ttgttaaggagtttggcaacaaggcttccacatgcacctcaagctacaaggatggctgac
cctcatgtaaaagcacaacttctattgcaagcacatttatccagaatattacttggccca
gaactacaaaaagatacagaattagtattaagcaaagctataagattaatacaagcttgt
gttgatgttcttagttcatctggttggctagctcctgctgtggctgctatggaactagca
cagatggttacacaagccatgtggtctaaggattcgtacctcaaacaattaccacatttt
acacctgaaactatcaaacgttgtacagataaaggagtagaaacggtatttgatgtaatg
gaattggaagatgatgatagaaatcgtcttttacaattatctgagactcaaatggcagat
gtagctaaattttgtaatcgttatccaaacatagaaatgtcctatgaagttcaagataaa
gataaattacgcagtggtggtacagtaaatgtaattgtacagcttgaaagagaagatgaa
gtgacaggtccagttgtagcacccttcttcccacaaaaacgcgaagaagggtggtgggtt
gttatcggcgatccgaagactaattctttattatcgattaagaggttgacactacaacaa
aaggcgaaggtcaaactcgattttgtggcacctgctcctggtcaacattcttacactttg
tatttcatgagtgatgcttatttaggttgtgaccaggaatacaaatttactatcagtgta
gaagagtatgaatcggatgttagttcagggtcagaatcagattaa
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integrated database retrieval system
