Bombus affinis (rusty patched bumble bee): 126920548
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Entry
126920548 CDS
T09368
Name
(RefSeq) ATP-dependent RNA helicase WM6
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
baff
Bombus affinis (rusty patched bumble bee)
Pathway
baff03013
Nucleocytoplasmic transport
baff03015
mRNA surveillance pathway
baff03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
baff00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
126920548
09122 Translation
03013 Nucleocytoplasmic transport
126920548
03015 mRNA surveillance pathway
126920548
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
baff03019
]
126920548
03041 Spliceosome [BR:
baff03041
]
126920548
Enzymes [BR:
baff01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
126920548
Messenger RNA biogenesis [BR:
baff03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
126920548
Spliceosome [BR:
baff03041
]
Complex C
Other components
EJC/TREX
126920548
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
126920548
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
126920548
NCBI-ProteinID:
XP_050587074
LinkDB
All DBs
Position
9:complement(9458907..9464327)
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AA seq
424 aa
AA seq
DB search
MADNDDLLDYEDEEQTEQLVDGSRDTPAKKEVKGTYVSIHSSGFRDFLLKPEILRAIIDC
GFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLELTENQVYVLVMCHTR
ELAFQISKEYERFSKYMPHVKVGVFFGGLPIQKDEEVLKNVCPHIVVGTPGRILALVRNK
KLNLKHLKHFILDECDKMLELLDMRRDVQEIFRSTPHGKQVMMFSATLSKEIRPVCKKFM
QDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVQRCMAL
AQLLTEQNFPAIGIHRGMTQEERLSRYQQFKDFQKRILVATNLFGRGMDIERVNIVFNYD
MPEDSDTYLHRVARAGRFGTKGLAITLVSDESDAKILNDVQERFDVNITELPDEIDLASY
IEGR
NT seq
1275 nt
NT seq
+upstream
nt +downstream
nt
atggcggataatgatgacctcttggattacgaagatgaagaacagactgaacaattagtt
gatggaagtagggatacacctgctaaaaaagaagtgaagggcacatatgtatctattcac
agtagtggatttagggattttcttcttaaaccagaaatattacgtgcaattattgattgt
ggttttgaacatccatctgaagtacaacatgaatgcattccccaagcagtgcttggtatg
gatatattatgtcaagcaaaatctggcatgggaaaaacagctgtatttgtgctagctaca
ttacagcaattagaattaacagagaaccaggtctatgtccttgtcatgtgtcatacgcga
gaacttgccttccaaattagcaaagaatatgaacgatttagcaaatatatgcctcacgtg
aaggtcggtgtattttttggtggtttaccaattcaaaaagatgaagaagtcctaaagaac
gtatgtcctcatattgttgttggtacaccaggtcgtatccttgctcttgttcgaaataaa
aagttaaatctgaaacacttgaagcactttatactcgatgaatgtgataaaatgctcgag
ctattagacatgcgcagggacgtacaggaaatatttagaagcactccacacggcaaacaa
gtcatgatgttcagcgctacattgtccaaggagatacgtcctgtctgcaaaaagttcatg
caagatcccatggaagtctatgtggatgatgaagcgaaactcacgttgcacggtctacaa
caacattatgtgaaacttaaagagaatgaaaagaacaagaagctatttgaattacttgat
gtacttgaatttaatcaggtcgttatctttgtaaaatctgtacaaaggtgtatggctttg
gcacaacttctaacagaacaaaattttcctgcgattggtatacacaggggtatgactcag
gaagaacggctatcaaggtaccaacaatttaaagatttccaaaagcgaattttggtagct
acaaatttatttggacgtggtatggatattgagcgtgtaaacatagtgtttaattacgat
atgccagaagattcggacacatatctacatcgagtagccagagctggtcgtttcggtacc
aagggtcttgctattacattagtcagtgatgaaagtgatgctaagatactgaacgatgtt
caagaacggtttgatgttaatattacagagttaccagatgagatagatctagcttcatac
attgaaggacgataa
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