KEGG   Bombus affinis (rusty patched bumble bee): 126920557
Entry
126920557         CDS       T09368                                 
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
baff  Bombus affinis (rusty patched bumble bee)
Pathway
baff03018  RNA degradation
baff03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:baff00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    126920557
  09123 Folding, sorting and degradation
   03018 RNA degradation
    126920557
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:baff03019]
    126920557
   03041 Spliceosome [BR:baff03041]
    126920557
Messenger RNA biogenesis [BR:baff03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     126920557
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     126920557
Spliceosome [BR:baff03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    126920557
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 126920557
NCBI-ProteinID: XP_050587093
LinkDB
Position
9:9457577..9458757
AA seq 139 aa
MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDSWMNINLREVICTSRDGDKFWRMPECY
IRGSTIKYLRIPDEVIDMVKEDVQMKSRGRGEMKGRGQSQRGRGSGRGTFGRGGRGPAAL
GRGGGNQGGNKSQNKARTK
NT seq 420 nt   +upstreamnt  +downstreamnt
atgttacctttgtcgttattaagaactgctcaaaaccatcctatgctagtcgaacttaag
aatggagaaacgtataatggacatttagttagttgtgatagctggatgaatattaatctc
agagaggttatatgtacatccagggatggcgataaattttggagaatgcctgaatgctat
attcgaggtagtacaattaagtatttacgaattcctgatgaagtcatagatatggtaaaa
gaagatgtacaaatgaaatcgaggggacgtggagaaatgaaaggaagaggacaaagtcaa
cgaggtcgtggtagtggaagaggaacttttggtcgtggtggtagaggccctgctgctctt
ggtcgtggtggaggtaatcaaggaggaaacaaatctcaaaataaagcaagaaccaaatga

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