Bombus affinis (rusty patched bumble bee): 126920627
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Entry
126920627 CDS
T09368
Name
(RefSeq) DNA repair protein RAD50
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
baff
Bombus affinis (rusty patched bumble bee)
Pathway
baff03440
Homologous recombination
baff03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
baff00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
126920627
03450 Non-homologous end-joining
126920627
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
baff03032
]
126920627
03400 DNA repair and recombination proteins [BR:
baff03400
]
126920627
DNA replication proteins [BR:
baff03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
126920627
DNA repair and recombination proteins [BR:
baff03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
126920627
BRCA1-C complex
126920627
NHEJ (non-homologous end-joining)
MRX complex
126920627
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
AAA_21
SbcC_Walker_B
Rad50_zn_hook
SMC_N
AAA_15
AAA_29
AAA_16
DUF6471
AAA_13
ABC_tran
AAA_28
AAA_22
Motif
Other DBs
NCBI-GeneID:
126920627
NCBI-ProteinID:
XP_050587227
LinkDB
All DBs
Position
9:8477280..8483250
Genome browser
AA seq
1387 aa
AA seq
DB search
MSRIRRLSIRGIRNFGDLNDEAKIRFSRPLTLILGPNGTGKTTIIEALKFATCGEFPPGS
DRGKFFIHDPTLSVTPSIRGVVKAEIIDAAGNMYIICRTIESTKGNVSVKFKTLDNALTR
IMKGQNKAVSISNKCANVDTELTLAMGVSKPILDYVIFCHQEDLNWPFQDGKKLKEKFDE
IFDSARFNKALENIMKYIKDMNQKMHILKEQKQNCQLIVSEVADKEAKLEDNKKRLEDSK
AKIEEFDKELEPVQQKIKKFEKLDADYKNLQNEEKRKKAEYDMFKQQLDRLEEDLQYVFE
GTKEELLKQIESHDEELIGQTDKIEELAKRLKNIAGKESSISSDLSNERVSNGSLRQQIK
DHERKVNLRNAILNEILSSWNIDNIDTNVSELEIMALTSRLTEKMEELRHCVEQKRLKRE
EEENALHKAIDSLRSKHSKVESEKNLKESEVTQTKEEINKIKLDIAQLGAAASKLSSIEL
RIQEVQKKVQELNEAMDVNVVKKEVVNKIKIRNEMETLLNTVDQEITLLSKQSTQQAELD
LNKSTLHSKEKEIEELKNKREEDIMTLFDIKELSQTKLKTNLDVVQKQLANEMESINQEI
QAEERRITTLETTISHIEHELQNKKREINSDKEKVSSVCHYKSFDETLLLQSKKVKDLQD
KRGMYAHQSVAYKEYMKQLRETNPSCPLCHRDFDKRENVVTLLKEMESEMENHPNRLKEC
ERELKTQQEKYDKMLQLKPVVEKIIQLEESELEKLMNSLEKSKNKLSISRTTVMELETKK
TCPKKKLAICKDIVGDIMLWDTYIDDISKLKQTIDNLQIRMTAAGIKTKRSLEEAQSQRE
ELKMSLKNIRDNIEELQSKINMHNEKLNNARQEQNTLQEEKLKIQSDIQKVKELKEKQET
LYSKEISLWKSINILKKQVTIAETELNSELEKLEEKRKDNSAKLECDRKLVTDAVRRLSE
LQRIQDEVDISVYSNVPESLENSEKKIKDYEKLLNELLCEKSDIETTINKLKENVTRQEV
RKRELSDNLALLQTQETTKNLQQKYLKIKEKLNAINYSQVLNDWKNVQSREQTILRQQNI
IKGNQEELERTLQQYTQELKKDIYRQARKNYKSKCIELTVIEEAILNLKAYSKALDVAMI
QYHEERMATVNRIIKQMWKLVYTGKDTTSIEIHTDATEGIGSTRRTYNYKLVQMKHGHEI
DMKGRCSAGQKVLASIIIRLALAETFCKDCGILALDEPTTNLDQENADSLAEALATVVKL
RSQHQKNFQLIVISHDEKFLFKLAELNSNKGFYQLYRKQNGYTAIRHCLVNSQDRIASDP
IKQESDEEESSNEESEERSILQDKLHETTSQRKAPNEQTHKRRRHISDDDADPPIESATS
KKRYIFQ
NT seq
4164 nt
NT seq
+upstream
nt +downstream
nt
atgtcacgaataaggagactttctattcgtggtattcgtaattttggcgatctgaatgat
gaagctaagattcgattttctcgtcctttgacacttattcttggtccaaatggtaccggg
aaaacgacaattattgaagcactaaaatttgctacttgcggtgaatttccacctggctca
gatcgaggaaaattttttattcatgatccaactctatcggtgacaccatcgatccgaggt
gttgtaaaagctgaaataattgatgcagcaggtaatatgtacataatatgtagaacgata
gagtcaacaaaaggaaatgtgtcagtgaaatttaaaactctcgataatgctttaactaga
ataatgaaaggtcaaaataaggcagtatcaatatctaataaatgtgctaatgttgataca
gaacttacattagcaatgggagtttcaaaacccattttggattatgtgatcttttgtcat
caagaagacctcaattggcctttccaagatggtaaaaaattaaaagaaaaatttgatgag
atttttgatagtgctagatttaataaagctcttgaaaacattatgaaatatatcaaagat
atgaatcaaaagatgcatatattgaaagagcaaaaacaaaattgccaacttattgttagt
gaagtagcagataaagaagcaaagcttgaagataataaaaaacgattggaagattctaaa
gccaaaattgaggaatttgataaagaattagaacctgtgcagcagaaaattaaaaaattt
gaaaaattagatgctgattacaaaaatctgcaaaatgaagaaaagagaaaaaaagcagaa
tatgacatgttcaaacaacaactggatagattagaagaagatttacaatatgtgtttgaa
gggactaaagaagaattattaaagcagatagaatcacacgatgaagaattaataggacaa
actgacaaaatagaagagcttgcaaaaagattaaaaaatattgctggaaaagaatctagc
atatcaagtgatttatctaatgaaagagtatccaatggttctttaagacaacaaattaaa
gatcacgaaaggaaggttaatcttcgcaatgcaatattaaatgaaatattatcttcttgg
aatattgacaacattgatacaaatgtatcagaattagaaataatggcccttactagcagg
ctgactgaaaaaatggaagaattacggcattgcgtagaacagaaaagattgaaaagagaa
gaagaagaaaatgcattacataaagcaattgattctttacgtagcaaacattcaaaagta
gaatcagaaaaaaatcttaaagaaagtgaagtaacacaaacaaaagaagaaattaataaa
ataaaattagatattgcgcagcttggtgcagcagcaagtaaactaagttccattgagtta
agaatacaagaagtacagaaaaaagttcaggaattaaatgaagcaatggatgtgaatgtt
gtgaaaaaagaagttgttaacaaaattaagattcggaatgaaatggaaacacttctaaat
acggttgatcaagaaataactttattatcgaaacagagtacgcagcaagctgaattagat
ttaaataaatctacattacattctaaagaaaaagaaatagaagaattaaagaacaaacgt
gaagaagacataatgactttgtttgatattaaagaactatcccaaactaaattaaaaact
aatctagatgtggttcaaaaacaattggcgaatgaaatggaatctattaaccaagaaatt
caggcagaagaacgtcgaataactacattagaaacaacaatatcacatattgaacatgag
cttcaaaataaaaaaagagaaattaattcggataaagaaaaagtttcatcagtttgtcac
tacaaaagttttgatgagactttattattacaatcgaaaaaagtaaaagatcttcaagac
aaaaggggaatgtatgctcatcaaagtgtagcttacaaagagtatatgaaacaattaaga
gaaacaaatccttcttgtcctctatgccatagagattttgacaaacgtgaaaatgttgta
actttattgaaagaaatggaaagtgaaatggaaaatcatccaaatcgtttgaaggaatgt
gaaagagaattgaaaacacaacaggaaaaatatgataaaatgttgcaattaaaaccggtc
gttgaaaaaataatacaattagaagagagtgaattagaaaaattaatgaatagtttagaa
aaatcaaaaaataagttgagtatatctcgaacaactgtaatggaattagaaacgaaaaaa
acttgtcctaaaaagaaattagcaatatgcaaagatattgtaggtgatattatgttatgg
gatacatacattgatgacatttccaaactgaaacaaacaattgataacttacagattcgt
atgactgctgcaggcattaagacaaaacgtagccttgaggaagctcaaagtcaaagagaa
gagttgaaaatgtctttaaaaaatattcgcgataatattgaagaattacaatctaaaata
aatatgcataatgaaaaattaaataatgctcgacaagaacaaaatacattacaggaggag
aaattaaagatccaatcagatatacaaaaagtaaaagaattgaaggaaaaacaggaaacc
ttgtactcaaaagaaatttctctttggaaatcaattaatatattgaaaaagcaagtaact
atagcagaaaccgaattaaattcagagcttgagaaattagaagaaaagaggaaagataat
tcggcaaaactggaatgtgatagaaaattggtaacagatgcagttagacgtttatctgaa
ttacaaagaatacaggatgaggttgatatttccgtatatagtaatgttcccgaatcttta
gaaaactctgaaaagaaaataaaagattatgaaaagttgcttaatgaactgctttgtgaa
aaaagtgatatagaaacaacgattaataaattaaaggaaaatgttactcgtcaagaagtt
cgaaaaagggagttgtcagataatcttgcactgctgcaaactcaggaaacaaccaaaaat
ttacaacaaaaatatttaaaaataaaggagaaattgaatgctataaattattctcaagta
cttaacgactggaagaatgtacaaagtagagaacaaactatactccgtcagcaaaatata
attaagggaaatcaagaagaattggaaagaacactgcagcaatatacgcaagaactaaaa
aaagatatatatagacaagctcgtaaaaattataaaagcaaatgcatcgaattaacggtt
atagaagaagctatattaaacttaaaagcatatagcaaagcattggacgtggctatgata
caatatcatgaagagcgtatggccacagttaatagaatcattaaacagatgtggaaactt
gtatatactgggaaagatacaacatcaatagaaattcatacagacgcaaccgaagggata
ggtagcacaagaagaacatataattacaaattagttcaaatgaaacatggtcatgaaata
gatatgaaaggtcgttgtagtgctggtcaaaaagttctagcgtcgataattataagactc
gctttagcagaaacattctgtaaagattgcgggattcttgcattggatgaaccaacaaca
aatttggatcaagaaaatgctgatagtctagcagaagcgttggctacagttgtcaaattg
cgatcacaacatcagaaaaattttcagttaattgtaattagtcacgatgagaaattttta
ttcaaactagctgaattaaacagtaataaaggattttatcaactttaccgtaagcaaaac
ggttacacagcaattagacattgtctagtgaacagtcaagatcgtattgcgtcagatcct
ataaaacaagaatctgatgaagaagagtcgtctaatgaagaaagtgaagaacgttccatc
ttacaagataaattacatgaaacaacttcgcaaagaaaagcgcctaacgagcaaacacat
aagagaagaagacatatttcggatgatgatgctgatcctcctattgaaagcgcaacatca
aaaaaaagatatatatttcaataa
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integrated database retrieval system
