Bombus affinis (rusty patched bumble bee): 126921153
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Entry
126921153 CDS
T09368
Name
(RefSeq) collagen alpha-1(IV) chain
KO
K06237
collagen type IV alpha
Organism
baff
Bombus affinis (rusty patched bumble bee)
Pathway
baff04382
Cornified envelope formation
baff04512
ECM-receptor interaction
baff04518
Integrin signaling
baff04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
baff00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
126921153
04518 Integrin signaling
126921153
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
126921153
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
126921153
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
baff04147
]
126921153
00536 Glycosaminoglycan binding proteins [BR:
baff00536
]
126921153
Exosome [BR:
baff04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
126921153
Glycosaminoglycan binding proteins [BR:
baff00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
126921153
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
126921153
NCBI-ProteinID:
XP_050588380
LinkDB
All DBs
Position
10:8245455..8300832
Genome browser
AA seq
1839 aa
AA seq
DB search
MRPRAAATSTNAARGLRPFPVVLRVTCVLALLVVTWIPVTEAVICRDSYKCDCKGIKGTP
GFPGITGPQGPEGLPGDIGPDGPPGPKGEKGAAGEYGGTGEKGYRGDEGIRGFPGAPGVP
GNPGPEGVMGPDGLDGCNGTDGRAGAPGLPGMHGERGQPGPEGDPGIVGEPGDGGINSVG
VKGVRGNPGIDGFEGFQGSYGISGEMGYPGERGDVGYRGPMGLPGMQGEVGETVYGAKGT
VGEQGDRGEPGPPSKDEYKKTDTMYYPVKGSRGEKGMRGNKGGYGRKGEPGIKGPHGRPG
FAGTKGMKGEQGNDGPRGKQGAIGPPGPSGEKGEKGAPGYAGQPGPDGLDGELGEPGNQG
PPGKQGAAGEPGQYIPELDEIIQGNIGIQGDLGPPGNPGEPGIPGLPGKVGYIGPPGPPG
PLGSPGSAGLKGSSIKGEPGQDGLTGEMGLQGPPGAPGIPGLDGPKGFPGISIHGPPGLD
GKPGYPGIPGLPGDRGDHGPQGPKGFPGKGSRIGGPPGERGLPGLPGLPGPDGFPGAPGF
KGVKGLKGDDCGVCTPGLPGRKGEPGDSGLDGYPGTPGYPGLSGLRGFKGVQGKRGIMGP
RGLEGDSGRPGIAGPQGPKGEMGKLTWPDKLTRMPGDIGDKGFPGVEGPRGPRGQPGSRG
DSGIQGPKGEKGDFGPPGFPGRDGFAGLDGIPGVPGDNASIPKEFLRGEPGFPGIPGTKG
PMGDKGGKGEPGESYPPPVINLKGEKGYKGGRGDIGEDGAKGLEGWPGDEGFPGLPGISG
SPGISRQGPIGLKGYPGMPGDQGPRGTSGTPGSQGPMGFTGRLGNKGDRGEPGSNQTYGD
YGLMGWFGKKGDVGDPGPRGLQGRPGLDGVKGTKGSKGAPGQEGLPGLQGAKGQRGYSTQ
GPRGFPGMAGQPGMPGRMGEVGITGPYGTPGFDGMKGLKGEIGFIGRRGDDGDAGPMGYS
GRDGAPGQPGPPGPDGADGETGEPGPPGWPGPDGMPGIIGAKGQPGDTGPEGIIGIIGLP
GPKGISGDVGPDGLDGLPGESAFSGPQGEVGEPGFMGEVGPPGFPGMDGRHGPPGEPGIG
RNGSPGLKGIEGDTGFDGFNGLPGPKGEVGDMGPDGLKGPRGTWGLKGTPGAYGIHGLPG
VKGERGPIGPPGYSGPKGKRGLDGDPGQMGLPGMPGDPGPRGLPGLMGAPGPKGMVGEPG
PPSYGESERGDFGTPGLEGLQGEKGIRGEQGSIGLHGRKGMKGDIGFPGPDGFPGVPGFP
GLPGDRGPQGFPGLPGELAEPSEDGLPGLDGLPGTPGIPGQKGAPGEYGYNGPKGIMGDV
GFSTRGPKGLPGDRGPEGFRGFPGAPGLVGLEGVPGLQGPKGEPGDRGLPIFASKGRQGE
PGLPGFNGRKGIKGEIGDTGAPGREGLFGRKGQRGDDGDEGLSGAMGLPGPKGPKGDNGI
NPFSPFPRKGLPGDVGLPGLPGFPGLQGMIGEQGEDGIPGRKGEPGMEGLPGLPGPEGVS
GPPGYPGPRGAIGRQGPPGAPGIRGSPAPPAPGARNRGFFFARHSQSEMIPVCPRNTVKL
WDGFSFLHIMGEGYSVGQDLGTAGSCLQKFSTMPFTMCNLQNVCDYANKNDYSYWLSTTE
PMPMSMASIPAPEVGRYLSRCSVCEAPTRVIAVHSQSMAIPECPGGWEELWIGYSFLMHR
DAGGRGYGQSLVSPGSCLEEFRTRPFIECHGFGACNYYSTAISYWLTIIKEYEMFRRPIP
QTLKADHTSRVSRCAVCIRRRVTEDQHARTPRPFTPNGQRDQVGNIQYPPPHSYYPNYQY
HKKPPISKTRDPNRRVPYHYRRRGRLRKPERTTESPNAA
NT seq
5520 nt
NT seq
+upstream
nt +downstream
nt
atgcggcctagggccgcggcgacgtcaaccaatgcagcccgcgggttacgtccgttcccg
gttgtcctgcgagtcacctgcgtccttgccctactggtcgtcacgtggataccggtcacc
gaggctgtgatctgcagagattcatacaaatgcgattgcaaggggataaaaggtacacca
ggtttccctggtatcactggacctcagggaccagaaggacttcctggtgacatcggacca
gatgggccacctggtccgaaaggtgaaaaaggtgctgctggagaatatggtggtacagga
gaaaagggctacaggggtgacgaaggtatacgaggattccccggagctccaggagtaccg
ggtaatcccggtccagaaggtgtaatgggaccagacggtctggatggatgcaacgggacc
gatggacgtgccggtgcaccaggattgcctggtatgcatggtgaacgtggtcaaccaggg
ccagaaggagatccagggatcgttggcgagcctggtgacggaggtatcaattccgtgggc
gtgaaaggtgttcgaggaaatccaggcatcgacggattcgagggttttcaaggatcgtat
ggaatctccggcgaaatgggctacccaggagagaggggagacgtgggttaccgcggaccc
atggggttaccaggcatgcaaggtgaagtgggtgaaactgtatatggcgcgaaaggtacg
gtaggtgaacaaggagacagaggagagcctggccccccgagtaaagatgagtacaagaaa
acagataccatgtactatccggtgaagggcagtaggggcgagaaggggatgcgaggaaat
aaaggtggttatggaagaaagggagaacctggcatcaaaggtcctcacggtcgtccagga
ttcgctggtactaaaggtatgaagggagagcaaggtaacgatggacctagaggcaaacag
ggtgcaataggtccgccaggaccttcgggagaaaagggagagaaaggggctccaggctat
gcaggacaaccgggacccgatggattagacggagagttgggagagcccggaaaccaagga
ccacctggtaaacaaggagctgcgggagaacctggacaatacataccggaactggacgaa
ataattcaaggaaatattggaattcaaggagatctaggtccgcctggcaatccaggagaa
ccaggaataccaggtttacccggtaaagtaggttatatcgggccacctggtcctcctgga
ccgctcggttctcctggatcggcaggactgaaaggatcttccatcaaaggagagccaggg
caagatggtcttaccggagaaatgggtttacaaggtccaccaggtgcaccaggtataccc
ggcctcgacggtccaaaaggttttcctggaatatcgatacacggcccaccaggcttagat
ggaaaacctggataccccggtattcctggattaccgggagatcgtggtgaccatggaccc
caaggtcctaaaggtttccctgggaaaggaagcaggatcggaggccctccgggtgaacgt
ggtttaccaggacttccaggacttcctggaccagatggatttccaggtgccccaggcttc
aaaggtgtaaaaggtcttaaaggagacgactgtggtgtttgtacgccaggtctacccggt
agaaagggtgaacctggtgattccggcctggacggatatcctggaacgccaggatacccg
ggattgtccggtcttcgtggattcaaaggcgtacagggtaaacggggtattatgggaccc
agaggattggaaggagacagtggaagaccaggaatcgctggtcctcaaggtcctaaagga
gaaatgggaaaactgacatggccagacaaactaactagaatgcctggtgatatcggtgac
aagggtttccctggtgtcgaaggaccaagaggcccgcgaggtcaacctggtagtcgtggt
gactctggaattcaaggacctaagggagaaaagggtgattttggtcctccagggtttcca
ggacgcgatggtttcgccggactcgatggtattccgggtgttccgggtgacaacgcatcg
ataccaaaagaatttcttcgaggtgagccgggtttcccgggcattccggggaccaaaggt
ccaatgggtgacaaaggaggaaaaggtgaacccggagaatcttatccaccaccggttata
aatctgaaaggagagaaaggatacaaaggaggacgaggtgatataggagaggacggtgcg
aaaggtctcgaaggatggcctggtgacgaaggatttccgggattgccgggaatttctgga
tcacctggtatatcgcgtcagggtcctataggattaaaaggatatcccggtatgccagga
gatcaaggacctcgcggaacatcgggtacaccaggatcacaaggaccaatgggtttcacg
ggacgcttgggtaacaaaggagatcgcggagaacctggatcaaatcagacgtatggcgat
tatggattaatgggttggtttggtaagaaaggagacgttggtgatcctggtcctagaggt
ttacaaggtagacccggattggatggtgtgaaaggtacaaaaggtagcaaaggtgcacct
ggtcaagaaggattacccggactacagggagccaaaggtcaacgaggttacagcactcag
ggacctaggggcttccctggaatggctggacaacctggaatgcccggaagaatgggagaa
gtcggtattacaggtccctacggaacacctggattcgatggaatgaagggtctgaaagga
gaaatcggtttcatcggacgcagaggtgacgacggtgatgctggaccgatgggttactca
ggaagggatggtgcaccgggtcaaccgggtcctcctggaccagacggtgccgatggtgaa
actggcgaacctggtcctcctggttggcctggtcccgacggaatgcctggaataattgga
gctaaaggacaaccgggagacactggacccgaaggtattataggaattataggattacct
ggtccaaaaggtatttccggagacgtaggaccggatggtttggacggacttccgggtgaa
agcgcgttcagtggaccccaaggtgaagtgggtgagcctggtttcatgggagaagtcgga
cctcctggattccctggtatggatggacgacatggtccacctggtgaaccaggaataggt
cgcaatggttcccctggtctgaagggaatcgaaggtgacactggctttgacggatttaat
ggactacctggaccaaaaggagaggtgggtgatatgggaccggatggtttgaaagggcca
agaggaacttggggtttaaagggaacgcctggagcatacggtattcacggtttacctggt
gtgaagggtgaaagaggtccgataggtccacctggttacagcggacctaaaggtaaacga
ggattggatggagatccaggtcaaatgggtttgccaggaatgcctggtgatccgggtcct
agaggattacctggtttaatgggtgcaccaggacccaaaggaatggtaggtgaaccaggt
cctccatcgtatggtgaatcagagaggggtgatttcggtactcctggcctcgaaggtttg
caaggtgaaaaaggaatacgcggtgaacaaggttccataggattacacggacgaaagggt
atgaaaggtgacattggattccctggaccagatggattcccaggtgtaccaggtttccct
ggtcttcctggcgatcgaggacctcaaggtttcccaggattacccggtgagttggccgaa
ccgtccgaggacggattacctggactagatggactacccggaactccaggaattccgggt
caaaagggtgcacccggagaatacggatataatggacctaaaggaattatgggagacgtt
ggtttcagcacgcgtggtccaaagggacttccaggagatcgaggtccagaaggtttcagg
ggtttccctggagctccaggattagtggggttagaaggcgtgcctggtctacaaggacca
aaaggtgaacctggcgaccgtggactgcctatattcgccagtaaaggaagacagggagaa
ccaggattgcctggatttaacggtagaaaaggaataaaaggagaaattggtgatacgggc
gctcctggacgcgaaggactatttggacgaaaaggacaacgcggtgacgacggagacgaa
ggtttatccggtgcgatgggacttccgggaccaaaaggaccgaaaggagataatggcatt
aacccattctcgcctttcccaagaaaaggtttacccggtgacgtaggacttccaggactg
ccaggtttccctggacttcagggcatgataggcgaacaaggagaagacggaattcccggt
agaaaaggagaaccaggaatggaaggacttcccggtcttccaggaccagagggcgttagt
ggtcctcctggttatcctggtcctcgcggtgcaattggtcgacaaggtcctccaggagcc
cctggaatacggggaagtccggcaccaccggcaccaggtgcccgaaacagaggtttcttc
tttgctcgacactcgcaatccgaaatgataccagtgtgtccaagaaatacagtgaaactt
tgggacggtttctcgtttttgcacataatgggcgaaggatattctgtcggacaggatctt
ggtaccgctggaagctgccttcaaaaattctccaccatgcctttcacgatgtgcaatttg
caaaacgtatgcgactacgccaataagaacgactacagctattggttgagcacgacagaa
cccatgcctatgtccatggcgtctataccggcaccggaagtcggaaggtatctgtccaga
tgttccgtttgcgaggctccaactcgagtgatcgcggtgcacagtcaatccatggctata
ccggagtgtcccggtggttgggaagaactttggatcggatacagtttcctcatgcatcga
gacgcaggcggacgcgggtacggtcagtccttggtgtcccctggttcctgtttggaagaa
ttccgcacgagaccgttcatcgagtgccatggctttggcgcgtgcaactattactccact
gccatatcctactggttgaccatcatcaaagagtacgagatgttccgcaggcctatacca
cagacgttgaaagccgatcacacatcgcgagtaagtcgttgcgcggtgtgcattcgacgt
cgcgttacggaagaccagcatgccagaacgccgagacctttcacgccgaacggccagaga
gaccaagtcggcaacattcagtatccaccgccgcattcatactatccaaactaccaatat
cacaaaaaaccgcctataagcaaaaccagagatccgaatagacgcgttccgtatcactat
cgaagaagaggcagactacgtaaaccggaacgaacgacagaatcaccgaacgcggcttaa
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