Bombus affinis (rusty patched bumble bee): 126921415
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Entry
126921415 CDS
T09368
Name
(RefSeq) collagen alpha-1(I) chain-like isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
baff
Bombus affinis (rusty patched bumble bee)
Pathway
baff04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
baff00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
126921415
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
baff00536
]
126921415
Glycosaminoglycan binding proteins [BR:
baff00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
126921415
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_1
Laminin_G_3
ConA_2nd_BAM2
Herpes_gI
Motif
Other DBs
NCBI-GeneID:
126921415
NCBI-ProteinID:
XP_050588934
LinkDB
All DBs
Position
10
Genome browser
AA seq
1805 aa
AA seq
DB search
MRRDHVKQQWRTLRLPRNIHSVYWAFCLLVALGLYPVLADIILQDMEKNIVDLMDGTGIH
QEPVGVIVTENRCYRNDTIAYDITESALLTINTNTLFPTGIPRDFSILVVAKPKIGSSAA
TLFAIYSDSGEEQLVLSLGNDVTLYYSTTPDDEDKPISFGIDISDGKWHRLGISIKGDTV
TLILDCTQQISKELSRNLDETISVSGIIIIGQQIVDGNMYMGGLEMLKIAPIPDAAYEIC
TIFAPNCRNQSRQSGHSNMRNYDPVVRTTSSTYYEDTNIDNSQTVPSSSYPVKPFSTAGS
YYETNYDNLHPPRSYGRTSERSGPNVSYNEQDENFVKGTEDDYENGSEEGNEDTEDSDNY
KLAYRPVNVTYATRPTVETFLRNQSVVFNNIDSVEVDRYQTTTPEISKTSNNLSREVQGG
LKYSESLEGSYYNPAYYSSRGSPGPRGFPGPPGVPGPPGKKGEPGRDGLAGLQGTAGPPG
NVFIIPALNQQGNEKGPDTQAEALRQMLSQHMLAMRGAEGPMGLTGIAGPEGPPGPQGQK
GEPGEVGEPGPRGERGIPGNTGREGRRGRPGRDGERGLSGPPGMKGEQGVPGLPGLPGDK
GERGFVGATGEQGLPGHEGMQGDDGPPGLPGLPGEMGPRGFIGPRGFPGLPGNPGIPGSE
GPPGAKGNTGPPGPPGVPGSPGPIGPVGPPGPQGLLGPTGLVGPQGKPGIPGLSGADGSP
GHPGNPGVPGMKGEQGPQGPQGPIGFPGVRGMKGDEGKRGSPGERGEKGERGPEGEKGDI
GTKGEPGLSGPQGIPGLEGLEGPKGFEGPRGETGLVGLPGEKGKTGPPGFVGYPGNVGEK
GDKGQPGREGPSGDKGERGNNGASGERGEPGPRGFRGARGRRGAEGLPGPKGDTGQPGPP
GLQGESGTPGVEGPRGFVGSPGQAGLNGKDGIPGPSGERGPVGDSGPPGPPGAPGVIGPQ
GPAGEPGQPGEPGSPGNPGAPGESGSPGEQGKEGPQGPPGLQGKEGSPGPGGLPGFPGER
GANGLPGMPGAKGEIGPPGLQGPSGDKGAQGESGKDGESGPQGKQGPKGPPGPVGLKGDR
GEPGPVGPTGRDGLPGQRGLPGAPGPVGVPGEDGDKGDIGPPGEKGFKGSQAETGPPGAP
GAQGLRGEPGAIGLPGEKGPPGEIGRRGPKGEDGPVGASGPPGPVGPQGLPGPSGLKGEV
GDTGIVGPVGPAGNPGEQGPRGPKGSEGLQGPPGVEGRQGAKGESGAVGLPGLIGPEGKQ
GERGPPGPKGEEGKSGPPGPPGSRGINGPEGPKGNAGPPGFPGPPGEPGLVGPKGEAGKN
GEDGKAGDPGAPGDIGPPGKEGLPGPAGKQGSEGPAGVQGSPGLPGEKGDMGPPGAQGPP
GSIGSQGLPGPSGLPGVRGLPGLAGENGPPGMSGAVGAPGKVGPVGPKGPKGDRGKRGIK
GHRGELGHVGVKGEQGEKGEQGPRGALGLEGPKGNQGPPGLLGFKGNDGPPGLPGIEGVI
GPKGNVGNDGPKGELGPPGPPGPPGPPAEQPMIPPELLFTREQILRRKRDISTNTAEDEK
EKDSETLDKDDQIEEEFGPKFLDMYSSIYAMRQELDRIRKPIGSRENPVRTCKDLFYGHP
HFHDGWYWIDPNLGMADDSVYVYCNMTNMGETCVYPDIHTSQMPNIPWRKENNKTDWYSN
LRGGFKITYEAIGVVQLNFLRLLSQEAYQNFTYTCINSVAWYNVLNFNYNSSLRLLGANE
DEFSYTGIKPQIVTDNCKMRKSKGDTVFLVYSKKLQQLPLVDFYPVDYGLPHQAFGFTVG
PICFK
NT seq
5418 nt
NT seq
+upstream
nt +downstream
nt
atgcggcgggaccacgtgaaacagcaatggagaacactgcgactgcctcgcaatatccac
tccgtttattgggcattttgtcttctcgtagcattaggactgtatccggtgctagccgat
attatcttgcaagacatggaaaagaatatcgtagacctgatggatggtacgggaatacac
caggagcccgttggagtgatcgtaaccgaaaatcgttgctacagaaatgatacaatagca
tatgacattacggaaagcgcgctactgacgatcaatacgaacactttgtttccgactggt
ataccgcgtgatttttccattttagtcgtcgcgaagccaaaaatcggatcctcggctgcc
acgttgtttgcgatctacagcgacagtggcgaggaacagttggtgctatcattgggcaat
gatgtcactctttactacagtacaactccggatgatgaggataaaccaatttcgtttggt
attgatatatccgatggaaaatggcaccgtctaggaatcagcatcaaaggcgatactgtc
acgctaattctcgattgtactcaacaaatttccaaagaattaagtagaaatcttgacgaa
acgattagcgtcagcggcatcataattatcggccaacaaatcgtcgatggtaacatgtat
atgggtggtctggaaatgttgaagatcgcaccaataccagacgcagcttacgaaatttgc
acgattttcgcgccaaattgtagaaatcaatcgagacaaagtggtcattcgaatatgcgg
aattacgatcccgtcgtgcgtacaacctcgtctacttattacgaggatacaaatattgat
aacagtcagacagtcccaagttctagttatccggttaaacccttctcaaccgctggatcg
tattatgaaacgaattacgacaatctgcacccgcctcgaagttatggcagaacatctgag
agatctggaccaaatgtttcgtataatgagcaggatgaaaattttgtaaaaggaacggag
gatgattatgagaacgggagtgaagaagggaacgaagataccgaagacagcgacaactac
aagttagcttatagaccagtgaatgtaacatatgcaacgagacctactgtggagacgttc
cttcgcaatcaaagtgtcgttttcaacaacatcgattcagtcgaagtagatcgctatcaa
acgacaacgccagaaatttctaaaacttccaacaatttatctagagaagttcaaggaggt
ttgaaatattcggaatcgttggaaggatcgtattacaatccagcttattatagtagtagg
ggttcgcctgggccacggggatttccggggcctccaggggtgcccgggccacctggtaaa
aaaggagaaccaggaagagatgggttagcaggtttgcaaggcacggctggcccaccggga
aacgtgttcataattccagcacttaaccagcaaggaaacgagaaaggaccggatactcaa
gcggaagctctgagacaaatgctttcacagcatatgttggctatgagaggtgccgaaggt
cctatgggtcttacaggtattgctggacccgaaggaccacctggacctcaaggtcagaag
ggagaacctggagaagttggcgaacctggacctcgtggtgaaagaggtattcctggaaat
actggcagggagggtagacgaggtcgacctgggagagacggagaaagaggtttaagtgga
ccaccaggaatgaaaggagaacagggtgtgcctggactgcctggattaccaggagataaa
ggcgaacgaggatttgtaggtgccaccggtgaacaaggtttaccaggtcacgaaggaatg
cagggtgacgatggtcctccaggtttaccaggcttaccgggtgaaatgggacctagagga
ttcataggaccacgaggttttcctggattaccagggaatccaggtattcctggaagcgaa
ggtccaccaggagcaaaaggcaatactggtcctccgggtcctccaggtgtgccaggttct
ccgggtccaattggaccagtaggaccacccggacctcaaggtcttttgggtccaactggt
ttagtgggtccacaagggaagcctggaattcctggattgtcgggggcagatggatctcct
ggtcatccgggaaatccaggcgttcctggaatgaaaggtgaacaagggcctcaaggaccg
caaggtccaataggcttcccgggagtccgtggcatgaaaggcgacgaaggcaaacgtgga
tcgcctggtgaacgcggagaaaagggagagagaggtccagaaggagagaaaggtgacatt
ggcacgaagggagaacctggattatcaggtccacaaggaattcctggattggaaggttta
gaaggaccaaaaggtttcgaagggccacgtggtgaaaccggtttagttggattacctggt
gaaaaaggtaaaactggtcctccaggttttgttggatatcctggaaatgttggtgaaaaa
ggtgataaaggtcagccaggaagagaaggccctagtggagataaaggagaaaggggtaac
aatggtgcgtcaggagaacgtggtgaaccaggacctaggggatttagaggtgctcgtgga
agaagaggtgccgaaggattgccaggaccgaaaggtgatactggacagccaggccctcct
ggattacaaggagaatctggtacgccaggagtagagggacctcgtggatttgtgggatct
cctgggcaagctggtctcaatggcaaagatggaatccctggaccctctggagaacgtgga
ccagtgggtgattctgggccgccaggtccaccaggtgcgcctggtgttatcggaccgcaa
ggtccagctggtgaacctggacaaccaggagaacctggaagtccaggaaatccaggagct
cccggagaatcaggttccccaggagagcaaggcaaagaaggaccacaagggccacctggt
ttacaaggaaaagaaggttcaccaggtcctggtggtctaccaggatttcctggtgaacgg
ggtgcaaatggtttaccgggaatgccaggtgcaaaaggagagataggaccacctgggctt
caaggtccatcaggcgataaaggtgctcaaggagaatctgggaaagatggcgaatctgga
cctcaaggaaagcaaggacctaaaggaccacctggtccagtcggattaaaaggcgacagg
ggtgagcctggaccagtcggtcctaccgggcgagatggtttaccagggcaacgtggtttg
ccaggagctcctggtcctgttggagtgccaggagaagatggagacaaaggagatattgga
ccacctggtgaaaaggggtttaaaggatctcaagcggaaacaggaccgccaggagcacct
ggcgcacaaggacttcgaggtgaacctggtgccatcggcttaccaggagaaaagggacca
cctggagaaattgggaggcgaggaccaaaaggcgaagatggtcctgttggtgcatcaggt
ccccctggtcccgtagggccacaaggattgccaggcccatcaggattaaaaggagaagtg
ggggatactggcatagttggtcctgtaggaccagcaggaaatccaggtgaacaaggtcca
aggggtcctaaagggtctgaaggcttacaaggtcctccgggagtagaaggtcgtcaagga
gcaaaaggagaatctggagcagtgggacttccaggtttaataggtccagaaggaaaacaa
ggcgaaagaggtcctccaggaccaaagggagaagaaggtaagagtggacctccaggaccg
cctggaagtcgtggtataaatggtccggaaggaccgaaaggtaatgcaggaccacctggc
tttcctggacctccaggagaacctggtttagttggcccaaaaggggaagctggtaagaat
ggtgaagatggaaaagcaggagatcctggcgcaccaggagacattggtcccccgggaaag
gaaggattacctggccctgctggaaaacaaggatccgaaggtccagcgggagtgcaaggt
agtccaggtttacctggtgaaaaaggagacatggggccgcctggggcgcagggtcctcca
ggttccatagggtctcagggtcttccaggaccatcaggtttgccaggtgtaagaggattg
ccaggacttgctggagaaaatggtccaccagggatgtcaggagctgttggtgctccagga
aaagttggaccggttggaccaaaaggtccaaagggtgacaggggtaaacgaggaatcaaa
gggcatcgaggtgaattgggacacgttggagtcaaaggagaacagggtgagaagggagaa
caaggaccacgaggtgctctaggacttgaaggacccaagggtaaccaagggccaccaggt
ttattgggtttcaaaggaaacgatggacctccaggacttccaggaatagaaggagtaata
ggacccaaaggtaatgtcggaaacgatggaccaaaaggcgagctcggccctccgggacct
ccaggtcctcctggaccacctgcagagcaacctatgattcctccggagttgttattcacg
agagaacaaattcttcgaaggaaacgcgatatttcgacaaataccgcggaagacgagaaa
gagaaagattcagaaacgttggacaaggatgatcaaatcgaagaggaatttggcccaaaa
ttcttggacatgtatagttctatatacgccatgagacaagaattggatcgaatacgcaaa
ccgattggaagcagagaaaatcctgtaaggacttgcaaggatttattttacggccatcct
cattttcacgatggttggtactggatcgatccaaatttaggaatggctgacgactctgta
tatgtttattgcaatatgacgaatatgggcgaaacttgcgtataccctgatattcatacg
agtcaaatgcccaatataccatggagaaaagaaaataataaaacggattggtactcaaat
ttgcgcggaggatttaaaattacatacgaagctattggagtagtgcaattaaattttctg
cgtttattgagccaagaagcttatcaaaatttcacttatacttgcattaatagcgttgct
tggtacaatgttttgaattttaattataattcatctttacgactgcttggtgctaacgag
gatgaattttcatataccggtatcaagccacagatcgttacggacaattgtaaaatgcgt
aaaagcaaaggagatacagtgttcttggtttacagtaaaaagcttcaacagttaccattg
gtggacttttacccagtcgattatggattgccgcatcaggcgttcggttttacagttgga
cccatttgtttcaagtaa
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