Bombus affinis (rusty patched bumble bee): 126921710
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Entry
126921710 CDS
T09368
Name
(RefSeq) protein similar isoform X1
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
baff
Bombus affinis (rusty patched bumble bee)
Pathway
baff04137
Mitophagy - animal
baff04140
Autophagy - animal
baff04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
baff00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
126921710
04137 Mitophagy - animal
126921710
04148 Efferocytosis
126921710
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
baff03000
]
126921710
Transcription factors [BR:
baff03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
126921710
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_3
PAS
PAS_11
PAS_9
PAS_4
HLH
PAS_2
Motif
Other DBs
NCBI-GeneID:
126921710
NCBI-ProteinID:
XP_050589437
LinkDB
All DBs
Position
11:complement(5484864..5521821)
Genome browser
AA seq
1397 aa
AA seq
DB search
MIASRVQPIDTLADNEPGRCSDWIARQSDNASFYDDQSTLPSCQFARAQIQPLSVDDYHH
SLNQNVDRSYNDQDKNPFECRSADVGTLAYQVFLPCMESSIPIEQLQPQAQSQCSQFRDC
AQNSTPKGAKNCQLGPVDVEDLALCFESDKPTTNCSLRVYRPSSSSNFRRRVKATRYGPY
PGSLTNDKQFEQPGFSLTDVSSSDLPCMDWFGGQFCGYFSQPFTFCTEERWLQCPESDRC
PLYDTTYSYGQNVLPPCLQEDLRNEYCQYEYNEDEQLLEDYLCNEKRKEKSRDAARYRRS
KETDIFSDLAAALPLPSEQASHLDKASVMRLAIAYLKVRSVVDSFPGTLTKSETLNHMDE
LFSKALNGFMLVLSNDGNMIYLSENVSDYLGVSQMDMMGQSVYEYSHPCDHDELRECLSS
KPAEKSDKRACNFFLRLKCTLTSKGRKVNLKSASYKVIHCTGRLTYIRNPVSNSSETSDA
EHESDDDGNERDTGASLVLLGCPIPHPSNIEIPLGRHTFLSKHSLSMKFTYTDEKLAEYL
GWSSEELVGQSVFEFYHALDNLALDKCFKSLFSKGQCETVAYRFLGKRGGYAWVVTQATL
IHCTKQQKPLSVVCVNYVLSGVEREDEVYSARQLAARDSEEAVKPEEKPAATSDVVQLPP
LQATTKLRVRVQVKSKKLEDTALEGNQQQLSLPATKSKPATTGSSDRAKPLTVTSSIFRA
ADKKAKKEPVQLQDGSRKDNTFPRPVQSTEKSFVGVQALKKSLEESLKENNEPKRKQRCR
QQSVASRAPFVFQGKPAVEYDPETTVRQDRPHVVTRHLFASIATQQQQQQQQQDQITCRP
PPQTATASIFAPRTEDMNKGFLTFSEDHPGLTMLKDEPEDLTHLAPTPGDVCVPLEDTPF
LTDMLDEFILGSDNYCPLLSPDGTLAPELRSTDFTDSLKDAELGDTTRSKDLGESLADSD
PFMYGDSPSSPCSIDPSAVSPPLTKYRQSPERSIDSLGSPTGGSGADGLSEDEMLMLGLN
DSIGDDELEFRAPYIPMSDQDEALDLLISNDMVMWSPPQTTDHKSCLKWTLTEKEQRTTD
SSLAQLLKMDQVVSRKYNDHGGGLVNPVQVLGQIPRKNINLDNCHWSSKMDRPTKRIHTA
SVDAGNDNKRIRCDESAKCSGHLSLEDHLLTNQQPSSRKSSNLGNSQLLRRLVSQQNVLR
NNFANGSYDSTVKGRQSVNRLEGNLNAEDGEGDSGGGGGVNDGGGRKVETNEGRCRRSGI
ENGDAISQVSQRNPACNSVLMNLLVSGCDENLMDSRNVPSIYPKSLMSPLSVNLENHQMV
PQCLDSRGSSVSFDQLSPAARKQLSNNTFITGGSIESSPSSPMMPFENFDYDTSMSASGL
LQVEPELFGSLLNRNLV
NT seq
4194 nt
NT seq
+upstream
nt +downstream
nt
atgatcgcgtcacgtgtccagccgatcgatacgctggccgataatgaacccggtcgttgc
tccgattggatcgccagacagtcagacaacgcgagtttctatgacgatcaatccacctta
ccgtcttgccaattcgctcgtgcacagattcaacccctttcagttgacgattatcatcat
tcccttaatcagaacgtggacagatcttacaatgaccaagacaagaatccgttcgaatgc
cgttctgcggacgttggaacgcttgcttatcaagttttccttccatgcatggaatcatcg
atccctatcgagcaattgcaacctcaagcacagtctcaatgtagccagtttcgagactgc
gcgcaaaatagtacgcctaaaggcgctaagaattgccagctgggtccggtggacgtcgaa
gatttggctctatgcttcgaatccgataagccaacgacgaattgctcattacgagtttat
cgaccgagtagttcgtcgaactttcgtcgtcgcgtgaaagcaacgagatacggtccctat
ccaggttccttgacgaacgacaaacaatttgaacagcctggattttcgttgacggatgtt
tcgtccagtgatctaccgtgtatggattggttcggtggacaattctgtggctacttttct
caaccgtttactttttgcaccgaagaacgatggcttcagtgtccagaaagcgatcgttgc
cctctgtacgacaccacctactcgtatgggcaaaacgtcctgccaccgtgcctgcaggag
gatctgcgaaacgagtattgccaatacgagtacaacgaggacgaacagctactagaggat
tatttgtgtaacgagaaaaggaaggaaaagtctcgtgacgctgcacgataccgtcggagc
aaagagactgacattttctcggatctagctgccgcccttccattgccatcggaacaggca
tctcacttagataaggccagtgttatgagactagcaatcgcgtatctcaaagtgcgctca
gtggttgattcctttccaggtacactgaccaaatccgaaacattgaatcacatggacgaa
ttattctccaaagctctaaacgggttcatgttggtgctatccaacgatggtaacatgatc
tatctgtcagagaatgtcagtgattaccttggtgtttctcagatggacatgatgggtcag
agcgtgtacgagtatagtcacccatgcgatcacgacgaattgcgggaatgcctgtcctcg
aaaccggctgagaaaagcgacaagcgtgcttgtaatttttttctacggcttaaatgcaca
ttgaccagtaaagggaggaaggtcaatctaaagagcgcttcctacaaggtgattcattgt
accggtaggttaacatatatccgcaatccagtgtcgaattcatcagaaactagcgacgcg
gaacacgaaagcgacgatgatggaaatgaacgagacactggagcctcgttggtgctactg
ggatgtcccataccacatcccagcaatatagagataccgttgggacggcacactttcctc
tcgaagcatagcctcagtatgaagttcacatacactgacgaaaaattggctgaatatctg
ggttggagcagcgaggagttagtgggacaatccgttttcgagttctatcacgccctcgat
aatttggctctggataaatgttttaaatcactgttcagcaagggacagtgtgagacagtg
gcctacagatttcttgggaaacgaggaggctacgcgtgggtcgtaacacaagccaccctg
atccactgcaccaaacagcaaaagccactttccgtcgtctgcgtgaattacgttttaagc
ggcgtggaacgcgaggatgaggtgtacagcgcgcggcagctcgcagcacgtgacagcgag
gaggccgtgaagccggaggagaaaccggctgccacgagcgacgttgtccaacttccacct
cttcaagctaccacaaagcttcgtgttcgagtgcaagtgaagagcaagaagctcgaggat
acagcgctcgaggggaaccaacaacaattatcgctacctgctacaaaatcgaaaccagcg
actaccggctcttccgatcgcgcaaaaccattgacagtgaccagttcgattttccgcgcg
gcggacaagaaggcgaagaaggagcctgttcaacttcaggacggctcgcggaaggataac
accttcccgagaccggtccagtctacagagaaatcgttcgtcggtgtacaggctttgaaa
aaatcgctggaagagtcgctgaaggagaacaacgagccaaaacgaaagcaacggtgccgc
cagcaatctgttgctagccgcgctccgttcgtgttccagggaaaacccgcggtggaatac
gatccggagacaacggttcgtcaggacaggccacacgtcgttaccagacacctgtttgct
tctattgcgacgcaacaacaacaacaacaacaacagcaagaccagataacctgcagacca
ccgccacagacagcgacagcgagtatcttcgctcctcgtaccgaggacatgaacaaaggc
ttcttgactttcagcgaggatcatccaggccttacgatgctgaaggacgaaccggaggat
ctaacacatctggcgcctacacctggcgacgtatgcgtccccctcgaagacacgcctttc
cttacggacatgctcgacgagtttattcttggcagcgacaactattgtcccttactgagc
cccgatggaaccctagcacctgaattacgctccacagatttcaccgactctctcaaagat
gctgagttgggagacaccacgaggagtaaggatctaggggagtctctggccgatagcgat
ccgttcatgtacggagattcgccgagcagtccatgtagcatcgatcccagcgcggtttca
ccgccgctcaccaagtaccgtcaaagtccagaacgaagtatagattcgttgggtagcccg
acagggggtagcggtgcggacggtttatcggaggacgagatgttaatgttaggcctgaac
gatagtataggcgacgacgagttggaatttagagcaccttatatcccaatgtcagatcag
gatgaggctctggatttgcttataagcaatgatatggttatgtggagtccgccacagacg
acagatcacaaaagttgtctaaaatggacgttaacggaaaaggagcaacgaacgacagat
tctagtttagcgcagttattgaaaatggatcaggtcgtctccagaaaatacaacgaccat
ggaggaggtctagtgaacccagtacaagttctcggtcagatccctagaaagaatataaat
ctagataactgccattggtcctccaaaatggacagaccaacgaagcgtattcacactgcc
tccgtagacgcagggaacgacaataagcgcatcagatgtgacgaatccgcgaaatgtagc
ggtcaccttagtctagaggatcacctgttaacaaaccaacagccgtcttcgagaaaatcg
tcgaacttgggcaacagtcaactgttgcgtcgcttggtgtctcaacagaacgttctgcgg
aataatttcgcgaacggatcgtacgacagtacggtaaaaggtcgacaaagcgttaatcgg
ttagaagggaatctgaatgcggaggatggcgaaggagacagtggtggcggaggaggagtt
aacgatggcggaggaagaaaagtcgaaacgaacgaaggaaggtgtcgtcgaagcggcata
gaaaacggcgacgcgatcagtcaggtctctcagcggaatccggcgtgcaacagcgtgcta
atgaatctcctggtatccggctgcgacgaaaacctaatggactcgcggaacgtgccgtcc
atataccctaaaagcctgatgtctccactgtctgtgaacctggagaaccaccaaatggtg
cctcaatgtctggattccagagggtctagcgtatccttcgaccagctgagtcctgctgcg
agaaaacaactatccaacaatacatttattactggaggatcaatcgagtcgtcgccatcc
tcgccgatgatgccattcgaaaattttgattatgatacgagtatgtcggccagtggtttg
cttcaagtggaaccggaattgtttggaagtctactgaatcggaatctcgtttaa
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