Bombus affinis (rusty patched bumble bee): 126922028
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Entry
126922028 CDS
T09368
Name
(RefSeq) SR-related and CTD-associated factor 4
KO
K13191
RNA-binding protein 16
Organism
baff
Bombus affinis (rusty patched bumble bee)
Brite
KEGG Orthology (KO) [BR:
baff00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
baff03021
]
126922028
03041 Spliceosome [BR:
baff03041
]
126922028
Transcription machinery [BR:
baff03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
126922028
Spliceosome [BR:
baff03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
126922028
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
126922028
NCBI-ProteinID:
XP_050590146
LinkDB
All DBs
Position
11:11936457..11949278
Genome browser
AA seq
1488 aa
AA seq
DB search
MEAVKAFNAELSALYDVKPPISKAKMNSLTRGAIKAIKFYKHVVQSVEKFIQKCKPEYKV
PGLYVIDSIVRQSRHQFGVEKDVFAPRFAKNMQTTFLNLLKCPQEDKSKVIRVLNLWQKN
AVFPSEVIQPLFDLADPNHPIHKEQAVNTNGTLNASATNNVSNTATSVKTPPLTAKNAVK
DQKLFSSAKPIDPAWLAQTKIETANIVNANKLLGQSNSAQMDVSFLDQLQHLQQLLLKKQ
ESTNEQKSSVKFDKKLLDFDYGEEEDDDVVVASSPAATAGSNTGQHNTVSTGNSLESLGL
LLTNPEVLRQLQTLQQTMQGSTSSSQHETEEKMRKLQQMKQQEEEFDKHLAQTVPNLPFA
SECELKPSDILKPSQQNTYTTNVSSGVIQDMSQPPPGYPPALPYASQPLSNIRQINQQAH
QNQKSPLLDERQDTQDYSGNGARRDSSSVEIVNCENTRSQSRSPDRYRHHSRSRSPRHRD
RDRDRDRDRDRDRDRDRDRKSRSRSRSRRRRSRSRDRGRDRKREDSREKMTEEEREKERE
RRKRGLPPIVRDKLSVCSTTLWVGHLSKLVHQEELSDTFGEFGDIVSIDLISPRGCAFIC
MNRRQDAYRALTKLKNHKMQGKAITLAWAPGKGVKGKEWKDYWEVELGVSYIPWNKLVNV
TDQDLELLEEGGMIDEDTLPPNLKGKLKHSGTNADVLQQQLQLQQQALVAAAGIPNLADG
IVNVMQPSTSAQQQQSQQQTSQQGQQQQQVIDTSQPPPIRPPTSAALLPPPNTQLQMMPP
AFTMPGVPRMIGPMGLPMAHSLMPNVPIGVPPPNMQSLLGPPGMMQTMLTPPVNSPFGAG
VGVGLLTQIPLPAPAAPSDKPNSTGMPHNVPPIGVPPPTTETGMPNLPMLRQPYGVGPSA
PLQMQLPQQQHSADDMDVEMEDAMPQSSNGAKNKSNLTEQQLSQNEERAESDQQVEHRDY
KERERDRENRERRDRETHLSHRDREGTDSRMDRGRDRGRGRDRGRDRRRDLRDRDRDDRR
ERENRENREGNPQTQTLQENETTPKKDGKPSLADRLRQLADGTLPLEDRVDRIIPRNRQE
RDRSDRNFDDSRSTRGEPLSSLMDLPKFGLPQERGDFPARPPDFRNPQDPREYQQQRDRQ
SFGRGHRGSQIHEEFMDVPRLQGGIYQEEFDNRIHGQQRVEEFGRLGSLREQREEFDRSE
VRGRRPLDDRDRFDYEIRRDGFDPRLQDGFDPRGHLDRGDFEPRRREFFGIDPIFGMPPI
MGPRGPRPGHPDGFGPRPAPLGARGPGPLMFHPRGLGPRPLRPGMRPFGPRGPPFDPREP
DAFFRPPFDDIRPHVRPPFGPMGPPSIIPPESAAPWRNQELPPGSWPSDSENHSQRDNLR
DKKGGNKHPNNMERENRNRGRKSRWTNVSPSGEEIEESKEQESTSANVEGKEEPAKEEEV
AVKEEVKEEIDMKEAISSERKEELVETVETKEEGIEMKKEEEEDCRDS
NT seq
4467 nt
NT seq
+upstream
nt +downstream
nt
atggaggcggttaaggcatttaacgcagagctctcagctctgtatgatgttaaaccacca
atttcgaaagctaagatgaattctttaactagaggtgcaattaaggcaattaaattctat
aaacatgttgtgcaaagtgtcgagaaattcattcaaaaatgtaagccagagtacaaagtg
cctggattgtacgttatagattcaatcgtacgtcagtccagacaccaatttggggtagag
aaagatgtctttgctccacgctttgccaagaacatgcaaaccactttcttaaatcttttg
aagtgccctcaggaagataaaagcaaagtaataagagttttaaatctttggcagaagaat
gcagtgttcccttcagaggttatacagcccttatttgatcttgcggatccaaatcatcca
atacataaggagcaagcagttaataccaatggtacactgaatgcgtctgcaacaaataat
gttagtaacactgcaacttctgtaaagacaccccctttgactgcaaaaaatgcggtaaag
gatcaaaaattattttcttccgcaaagccaatcgatcctgcttggcttgcacaaacaaaa
atagaaacagcaaatatagttaatgctaataaacttttagggcaatcgaattcagctcaa
atggatgtttctttccttgatcagttacaacatttacagcagttattattaaaaaagcag
gagtccacaaatgaacagaaaagttctgtaaaatttgataaaaagctcttagattttgat
tatggcgaggaagaggatgatgatgttgttgttgctagttcaccagcagcgaccgcagga
tctaatactggtcaacacaatacagtttcaacaggaaatagtttggagagtcttggactt
cttttaacaaatccagaggttttgagacaacttcaaacattacaacaaacaatgcaggga
agtacttcttcatcacagcacgaaacagaagaaaagatgcggaaacttcagcaaatgaaa
cagcaagaggaagaatttgataaacatctagctcaaactgttcctaacttaccatttgca
tctgaatgtgaattaaaaccatcagacattttgaaaccaagtcaacaaaatacctatacg
acaaatgtaagtagcggagtcatacaagatatgagtcaaccacctcctggttatccaccg
gctctaccgtatgcctctcaacctttatcaaatattaggcagataaatcagcaagcgcat
caaaatcaaaagagtccacttcttgacgaacggcaggacacgcaagattattctggaaat
ggtgcaaggcgagatagtagcagtgtagaaattgtaaattgtgaaaatacaagatcacag
agtagatcgcctgatcgatacagacatcacagtcgatctagatcaccacgacacagagat
agggatagagatagagatagggatagggacagggatcgagatcgagacagagatagaaaa
tctcgatcaagaagcagatctaggaggagaaggtctcgttcaagagacagaggtcgtgac
agaaaacgggaggatagtcgagaaaagatgactgaggaagaacgagaaaaagaaagagaa
aggcgtaaacgaggattaccaccaattgtgagagataaattaagcgtttgtagtacaacc
ctttgggtgggacatctatcgaaattagtacaccaagaagaactttcagatacttttgga
gaatttggtgatattgtcagtatagatttaatttcacccagaggttgcgcttttatatgc
atgaatagaaggcaagatgcatatagggctcttactaagcttaaaaatcataaaatgcaa
ggaaaggcaatcactttagcttgggctccaggaaaaggagtgaaaggaaaagaatggaaa
gattattgggaagttgaattaggagttagttatattccttggaataaattagttaatgtt
actgatcaagatttagaattattagaagaaggaggtatgattgacgaagacactctaccg
cccaatctaaaaggtaaattaaaacattccggaacaaatgcagatgtacttcaacaacag
ctgcaattgcaacagcaagcattagttgcagctgctggaattccaaatttggcggatggt
attgtaaatgtaatgcaaccttcaactagtgctcaacagcaacaatcccagcaacaaact
tcacaacaaggtcaacagcagcaacaagtaatcgatacaagtcaacctccaccaattaga
ccccctacatcagctgctcttttaccgccaccaaatacacaattacagatgatgccacct
gcttttacaatgccgggagttcctcgtatgattggaccaatgggattaccaatggcacat
agtttaatgccgaatgttcccataggtgtgccacctccaaatatgcaaagtttgttaggg
ccaccgggaatgatgcaaactatgttaacgccacctgtaaattctccatttggagcaggt
gttggcgttggcttattaactcaaattcctttaccagctccagctgcaccttctgataaa
cctaattctactggtatgccacataatgttcctccaataggagttcctccgccaacaacg
gaaacaggtatgccaaatttaccaatgttacgacaaccatatggtgtaggcccttctgca
cctttgcaaatgcaactacctcaacaacaacattctgctgatgacatggatgtagagatg
gaagacgcaatgccacaaagttcaaatggagcaaaaaataaaagtaatttaactgaacaa
caactttcacaaaatgaagaacgagcagaatctgatcaacaagtagagcatcgagattat
aaagaaagagagagagatcgtgaaaatagggaaagaagagacagagagacgcatttatct
cacagagatagggaaggtactgactctagaatggatcgcggaagagaccgaggtagaggg
agagataggggacgcgatcgtagaagagatcttagagatagagacagggatgacagaaga
gaaagggaaaaccgggaaaatcgagaaggaaatccacagactcaaactcttcaggaaaac
gaaactactccaaaaaaagatgggaaaccaagcttagctgatcgtttgcgtcaattggct
gatggcacactgccacttgaagatcgtgtcgatcgaataatacctcgtaatcgccaggaa
cgagatagatccgacagaaattttgatgattctcgatcgactcgtggagaacccctttct
tctttaatggatttgccaaagtttggtttacctcaagaaagaggtgattttccagctcga
ccaccagattttcgtaatccgcaagatccgagagaatatcagcagcaaagagatagacaa
agtttcggaagaggtcatagaggatcacagatacacgaggaatttatggatgttccaagg
ttgcaaggaggaatatatcaagaggaatttgataatagaatacatggacaacaaagagta
gaagaatttggaagacttggatcactcagagaacaaagggaggaatttgataggtctgaa
gtacgaggaagaagaccactcgatgatcgggaccggttcgattatgaaattaggcgagat
ggttttgatccacggcttcaagatggtttcgacccaaggggacacctcgaccggggtgat
tttgaacctagaaggcgagaattctttggaattgatcctatttttgggatgccgccaata
atgggacctagaggacctagacctggacatcctgatgggtttggaccacggccagccccc
ttaggagctcgtggaccaggtccattaatgttccatccacgaggtttgggacctcgtccc
cttcgtcctggtatgaggccttttggccctcgtgggccaccttttgatccccgagagccg
gatgcctttttcagaccaccttttgatgatattcgaccccatgtaagaccacctttcggt
cctatgggtccgccatccattattcctccagagtctgctgctccctggagaaatcaggaa
cttccgcctggttcctggccttccgattcagagaatcactcgcaaagggataatcttaga
gacaaaaaaggtggtaataaacatccgaataacatggaaagagaaaatcgaaatagggga
cgaaaatctagatggactaatgttagtccatctggagaggaaattgaagaatcaaaagaa
caagaatcaacctctgcgaatgttgaaggaaaagaagaacctgcaaaggaagaagaagta
gctgtgaaagaagaagtgaaagaagaaattgatatgaaggaagcaatctctagtgaacgg
aaggaagaattagtagaaacggttgagacaaaagaagaaggcattgaaatgaagaaggag
gaagaagaggattgcagggattcttag
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integrated database retrieval system
