Bombus affinis (rusty patched bumble bee): 126923438
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Entry
126923438 CDS
T09368
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
baff
Bombus affinis (rusty patched bumble bee)
Pathway
baff03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
baff00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
126923438
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
baff03041
]
126923438
03009 Ribosome biogenesis [BR:
baff03009
]
126923438
Enzymes [BR:
baff01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
126923438
Spliceosome [BR:
baff03041
]
Complex A
U1 snRNP components
U1 related factors
126923438
Complex B
126923438
Ribosome biogenesis [BR:
baff03009
]
Eukaryotic type
Pre-60S particles
Helicases
126923438
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
126923438
NCBI-ProteinID:
XP_050592848
LinkDB
All DBs
Position
13:complement(2097558..2102158)
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AA seq
572 aa
AA seq
DB search
MFNRDRDHNRACRGGSGRGNNKGGSDSIRGNSINICGIRGRGTTNNIRGIVKNKQPGGAL
RKINWDVRSLEPLRKDFYIEHPTVRSRSKEEVCQFRENAEITIKAIQAQGWPIALSGRDL
VAIAQTGSGKTLGYVLPAIVHIIHQPRLGNGDGPIALILAPTRELAQQIQEVANCFGEAA
GVRNTCIFGGAPKGPQAHDLERGVEICIATPGRLIDFLERGTTNLRRCTYLVLDEADRML
DMGFEPQIRKIIEQIRPDRQVLMWSATWPKEVRALAEDFLTDYTHLNIGSLTLSANHNII
QIVDVCQEFEKDLKLYRLLQEIGNEKENKTIIFVETKRKVDDITRNIRRDGWQALSIHGD
KNQQERDHVLQEFKSGRAPILVATDVAARGLDVDDVKYVINFDYPSSSEDYIHRIGRTGR
RRQTGTAYAFFTTHNMKHAGDLIEVLREAGQNINPRLTEMAELAKSGSYGSRSGKRFMSN
DRSNTRRGNTDTRGRGGSTRGRGRGGNSYQSTSNNYSNSDYNSYNNMRQSNSTNQNTGYG
YTQRTYGQSNLTPSYGGGDNYGSTYQYRGTTY
NT seq
1719 nt
NT seq
+upstream
nt +downstream
nt
atgtttaatcgagacagagatcacaatagagcctgcagaggtggtagtggcagaggtaac
aataaaggaggtagtgatagtattcgtggtaatagcattaatatatgcggtatacgtggt
agaggcactactaataatatcagaggtattgtaaaaaacaaacaacctggaggagctctt
agaaaaatcaattgggatgtgagatctttagaacctttgcgcaaagatttttatattgaa
catcctacagtaagaagcagatcaaaagaagaagtatgccaattcagagaaaatgcagaa
ataactataaaagcaattcaagcacaaggatggcctattgcacttagtggcagagattta
gttgctattgcacaaactggctctggaaaaacgctaggatatgttttaccagcaattgtt
cacatcatacatcaaccacgtcttggtaatggagatggtccaattgctttaatcttagct
cctacaagagaattagcccaacaaattcaggaagtagctaattgtttcggagaagcagca
ggtgtaagaaatacctgtatctttggtggtgcacccaaaggcccacaggcacatgattta
gaaagaggtgttgaaatatgtattgctacaccaggtagacttatcgatttcttggaaaga
ggaactacaaatttacgcagatgcacatatttagtattagatgaagctgatagaatgttg
gatatgggttttgaacctcaaataagaaagataattgaacaaattcgacctgatagacag
gttttgatgtggtcagctacatggcctaaagaagttcgtgcattagctgaagactttttg
actgactatacacatcttaatattggttctctgaccttatcagctaatcataatattatt
caaattgtggatgtttgccaggagtttgaaaaagatttaaaattatatagactacttcaa
gaaattggaaatgaaaaagaaaataaaacaataatttttgttgaaacaaaacgaaaagta
gatgatataacaagaaatatcaggcgagatggatggcaagcattgagtattcatggcgat
aaaaatcagcaagaaagagatcatgtattacaggaatttaaaagtggaagagctcctatt
ttagttgcaacagacgtagctgctagaggcttagatgtggatgatgttaaatatgtaata
aactttgattatccatcatcgtcagaagattacatacatagaattggtcgtactggacga
agaagacaaactggtaccgcttatgcattctttacaactcataacatgaaacatgcagga
gatttaatagaggtattaagagaagcaggacaaaatataaatccacgacttactgaaatg
gcagagttagctaaatcaggaagttatggaagcagaagtggcaaacgatttatgagcaat
gacagaagtaatactagacgaggtaataccgataccagaggaagaggtggttctacgaga
ggaagaggtcgtggtggaaattcttatcaatctacttcaaacaattattcaaattcagat
tacaatagctataacaatatgagacaaagtaattcaactaatcagaatacagggtatggg
tatacacagagaacttatgggcaaagcaatttaactccaagttatggaggaggagataat
tatggaagtacttatcagtatagaggaacaacatactaa
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